New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 996920	31 (0.980)	9 (0.310)	7/228	NT	21.8%	coding (679/2550 nt)	PP_0860	sulfite reductase flavoprotein subunit
	?	NC_002947	= 996935	36 (1.240)					coding (664/2550 nt)	PP_0860	sulfite reductase flavoprotein subunit

CCGCGGCGTCCTTGAGGTTGGCCCAGATGGCGTCGTAGTCCACCACCAGCGGCGGCGCATTCCTGTCGACGTTCTGCGGCCCGTGCCGGCCACGGCCTTCACCCCGTTTTTGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGCCCGGTCAGGGCGAACAGAAGATAGAACAGCAGGCACCAGGTGCCGGCAACGGCGTGCAGGTCCCAGTTGAAGGCGCGGCCTTTCTTGGCCCAGTC  >  NC_002947/996800‑997082                                                                                                                                           |                                                                                                                                                    ccGCGGCGTCCTTGAGGTTGGCCCAGATGGCGTCGTAGTCCACCACCAGCGGCGGCGCATTCCTGTCGACGTTCTGCGGCCCGTGCCGGCCACGGCCTTCACCCCGTTTTTGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGt                                                                                                                                       >  1:98827/1‑150 (MQ=255)      gcgTCCTTGAGGTTGGCCCAGATGGCGTCGTAGTCCACCACCAGCGGCGGCGCATTCCTGTCGACGTTCTGCGGCCCGTGCCGGCCACGGCCTTCACCCCGTTTTTGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAg                                                                                                                                   >  2:556410/1‑149 (MQ=255)      gcgTCCTTGAGGTTGGCCCAGATGGCGTCGTAGTCCACCACCAGCGGCGGCGCATTCCTGTCGACGTTCTGCGGCCCGTGCCGGCCACGGCCTTCACCCCGTTTTTGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAg                                                                                                                                   <  1:556410/149‑1 (MQ=255)           cTTGAGGTTGGCCCAGATGGCGTCGTAGTCCACCACCAGCGGCGGCGCATTCCTGTCGACGTTCTGCGGCCCGTGCCGGCCACGGCCTTCACCCCGTTTTTGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTc                                                                                                                             >  2:265132/1‑150 (MQ=255)            ttGAGGTTGGCCCAGATGGCGTCGTAGTCCACCACCAGCGGCGGCGCATTCCTGTCGACGTTCTGCGGCCCGTGCCGGCCACGGCCTTCACCCCGTTTTTGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTcg                                                                                                                            >  2:115695/1‑150 (MQ=255)            ttGAGGTTGGCCCAGATGGCGTCGTAGTCCACCACCAGCGGCGGCGCATTCCTGTCGACGTTCTGCGGCCCGTGCCGGCCACGGCCTTCACCCCGTTTTTGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTcg                                                                                                                            >  1:679180/1‑150 (MQ=255)                    ggCCCAGATGGCGTCGTAGTCCACCACCAGCGGCGGCGCATTCCTGTCGACGTTCTGCGGCCCGTGCCGGCCACGGCCTTCACCCCGTTTTTGCTGCTGGCCGACGC‑GCCGGC‑T‑GCGggccagcagcaaaaacggggtgaag                                                                                                                            <  2:101876‑M2/142‑26 (MQ=255)                    ggCCCAGATGGCGTCGTAGTCCACCACCAGCGGCGGCGCATTCCTGTCGACGTTCTGCGGCCCGGGCCGGCCACGGCCTTCACCCCGTTTTTGCTGCTGGCCGACGC‑GCCGGCTGCG‑gccagcagcaaaaacggggtgaag                                                                                                                              >  1:101876‑M2/1‑118 (MQ=255)                            tGGCGTCGTAGTCCACCACCAGCGGCGGCGCATTCCTGTCGACGTTCTGCGGCCCGTGCCGGCCACGGCCTTCACCCCGTTTTTGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAgg                                                                                                            <  2:462303/150‑1 (MQ=255)                                         caccaccaGCGGCGGCGCATTCCTGTCGACGTTCTGCGGCCCGTGCCGGCCACGGCCTTCACCCCGTTTTTGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGccc                                                                                               >  2:319935/1‑150 (MQ=255)                                         caccaccaGCGGCGGCGCATTCCTGTCGACGTTCTGCGGCCCGTGCCGGCCACGGCCTTCACCCCGTTTTTGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGccc                                                                                               >  2:295666/1‑150 (MQ=255)                                          accaccaGCGGCGGCGCATTCCTGTCGACGTTCTGCGGCCCGTGCCGGCCACGGCCTTCACCCCGTTTTTGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGCCCg                                                                                              >  1:424739/1‑150 (MQ=255)                                                aGCGGCGGCGCATTCCTGCCGACGTTCTGCGGCCCGTGCCGGCCACGGCCTTCACCCCGTTTTTGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGCCCGGTCAgg                                                                                        <  1:66871/150‑1 (MQ=255)                                                  cggcggcgCATTCCTGTCGACGTTCTGCGGCCCGTGCCGGCCACGGCCTTCACCCCGTTTTTGCTGCTGGCC‑‑CCCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGACCAGCCCGGTCAGGGc                                                                                      <  1:301496/150‑1 (MQ=255)                                                   ggcggcgCATTCCTGTCGACGTTCTGCGGCCCGTGCCGGCCACGGCCTTCACCCCGTTTTTGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGCCCGGTCAGGGCg                                                                                     <  1:291238/150‑1 (MQ=255)                                                               cTGTCGACGTTCTGCGGCCCGTGCCGGCCACGGCCTTCACCCCGTTTTTGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGCCCGGTCAGGGCGAACAGAAGATAg                                                                         >  1:590343/1‑150 (MQ=255)                                                                  tCGACGTTCTGCGGCCCGTGCCGGCCACGGCCTTCACCCCGTGTTTGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGGTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGCCCGGTCAGGGCGAACAGAAGATAGAAc                                                                      >  1:707316/1‑150 (MQ=255)                                                                     aCGTTCTGCGGCCCGTGCCGGCCACGGCCTTCACCCCGTTTTTGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGCCCGGTCAGGGCGAACAGAAGATAGAAcagc                                                                   >  2:161745/1‑150 (MQ=255)                                                                                     gCCGGCCACGGCCTTCACCCCGTTTTTGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGCCCGGTCAGGGCGAACAGAAGATAGAACAGCAGGCACCAGGTGCCgg                                                   <  2:590343/150‑1 (MQ=255)                                                                                       cGGCCACGGCCTTCACCCCGTTTTTGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCa                                                                                                        >  1:788738/1‑95 (MQ=255)                                                                                       cGGCCACGGCCTTCACCCCGTTTTTGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCa                                                                                                        <  2:788738/95‑1 (MQ=255)                                                                                        ggCCACGGCCTTCACCCCGTTTTTGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCTCTACCACTCATAGTACCATAACAGCCCGGTCAGGGCGAACAGAAGATAGAACAGCAGGCACCAGGTGCCGGCaa                                                <  1:319935/150‑1 (MQ=255)                                                                                                 cTTCACCCCGTTTTTGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGCCCGGTCAGGGCGAACAGAAGATAGAACAGCAGGCACCAGGTGCCGGCAACGGCGTGCa                                       <  1:181793/150‑1 (MQ=255)                                                                                                 cTTCACCCCGTTTTTGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGCCCGGTCAGGGCGAACAGAAGATAGAACAGCAGGCACCAGGTGCCGGCAACGGCGTGCa                                       <  2:679180/150‑1 (MQ=255)                                                                                                      ccccGTTTTTGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGCCCGGTCAGGGCGAACAGAAGATAGAACAGCAGGCACCAGGTGCCGGCAACGGCGTGCAGGTcc                                  <  1:295666/150‑1 (MQ=255)                                                                                                       cccGTTTTTGCTGCTGGCC‑‑CGCAGCCGTC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGccc                                                                                               >  1:137408/1‑88 (MQ=255)                                                                                                       cccGTTTTTGCTGCTGGCC‑‑CGCAGCCGTC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGccc                                                                                               <  2:137408/88‑1 (MQ=255)                                                                                                       cccGTTTTTGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGCCCGGTCAGGGCGAACAGAAGATAGAACAGCAGGCACCAGGTGCCGGCAACGGCGTGCAGGTccc                                 >  1:721348/1‑150 (MQ=255)                                                                                                             tttGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCggccagcagcaaaaacggggtgaaggccgtggccggcacgggccgcagaacgtcgacaggaatgcgccgccgctggtggtggactacgacgccatctgggccaacctcaaggacgccgcggg                           <  1:410345‑M2/150‑123 (MQ=255)                                                                                                             tttGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGCCCGGTCAGGGCGAACAGAAGATAGAACAGCAGGCACCAGGTGCCGGCAACGGCGTGCAGGTCCCAGTTGa                           <  1:115695/150‑1 (MQ=255)                                                                                                                  tgctgGCC‑‑CGCAGCCGGC‑GCGTCggccagcagcaaaaacggggtgaaggccgtggccggcacgggccgcagaacgtcgacaggaatgcgccgccgctggtggtggactacgac                                                           <  2:453815‑M2/113‑91 (MQ=255)                                                                                                                  tgctgGCC‑‑CGCAGCCGGC‑GCGTCggccagcagcaaaaacggggtgaaggccgtggccggcacgggccgcagaacgtcgacaggaatgcgccgccgctggtggtggactacgac                                                           >  1:453815‑M2/1‑23 (MQ=255)                                                                                                                  tgctgGCC‑‑CGCAGCCGGC‑GCGTCggccagcagcaaaaacggggtgaaggccgtggccggcacgggccgcagaacgtcgacaggaatgcgccgccgctggtggtgga                                                                  <  2:180198‑M2/106‑84 (MQ=255)                                                                                                                  tgctgGCC‑‑CGCAGCCGGC‑GCGTCggccagcagcaaaaacggggtgaaggccgtggccggcacgggccgcagaacgtcgacaggaatgcgccgccgctggtggtgga                                                                  >  1:180198‑M2/1‑23 (MQ=255)                                                                                                                  tgctgGCC‑‑CGCAGCCGGC‑GCGTCggccagcagcaaaaacggggtgaaggccgtggccggcacgggccgcagaacgtcgacaggaatgcg                                                                                   >  2:842666‑M2/1‑23 (MQ=255)                                                                                                                  tgctgGCC‑‑CGCAGCCGGC‑GCGTCggccagcagcaaaaacggggtgaaggccgtggccggcacgggccgcagaacgtcgacaggaatgcg                                                                                   <  1:842666‑M2/89‑67 (MQ=255)                                                                                                                  tgctgGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGCCCGGTCAGGGCGAACAGAAGAGAGAACAGCAGGCACCGGGTGCCGGCAACGGCGTGCAGGTGCCAGTGGAAGgcg                      >  1:272141/1‑150 (MQ=255)                                                                                                                       gCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGCCCGGTCAGGGCGAACAGAAGATAGAAcagc                                                                   <  2:496874/100‑1 (MQ=255)                                                                                                                       gCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGCCCGGTCAGGGCGAACAGAAGATAGAAcagc                                                                   >  1:496874/1‑100 (MQ=255)                                                                                                                        cc‑‑cGCTGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGCCCGGTCAGGGCGAACAGAAGATAGAACAGCAGGCACCAGGTGCCGGCAACGGCGTGCAGGTCCCAGTTGAAGGCGCGGCCt                <  2:98827/150‑1 (MQ=255)                                                                                                                        cc‑‑cGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAAc                                                                                                    <  2:308096/66‑1 (MQ=255)                                                                                                                        cc‑‑cGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAAc                                                                                                    >  1:308096/1‑66 (MQ=255)                                                                                                                         c‑‑cGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGCCCGGTCAGGGCGAACAGAAGATAGAACAGCAGGCACCAGGTACCGGCAACGGCGTGCAGGTCCCAGTTGAAGGCGCGGCCtt               >  2:92197/1‑150 (MQ=255)                                                                                                                             gCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGCCCGGTCAGGGCGAACAGAAGATAGAACAGCAGGCACCAGGTGCCGGCAACGGCGTGCAGGTCCCAGTTGAAGGCGCGGCCTTTc             <  1:161745/150‑1 (MQ=255)                                                                                                                                gCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGCCCGGTCAGGGCGAACAGAAGATAGAACAGCAGGCACCAGGTGCCGGCAACGGCGTGCAGGTCCCAGTTGAAGGCGCGGCCTTTCTTg          <  2:424739/150‑1 (MQ=255)                                                                                                                                  cGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGCCCGGTCAGGGCGAACAGAAGATAGAACAGCAGGCACCAGGTGCCGGCAACGGCGTGCAGGTCCCAGTTGAAGGCGCGGCCTTTCTTGGc        >  2:301297/1‑150 (MQ=255)                                                                                                                                         gTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGCCCGGTCAGGGCGAACAGAAGATAGAACAGCAGGCACCAGGTGCCGGCAACGGCGTGCAGGTCCCAGTTGAAGGCGCGGCCTTTCTTGGCCCAGTc  >  2:182271/1‑150 (MQ=255)                                                                                                                                           |                                                                                                                                                    CCGCGGCGTCCTTGAGGTTGGCCCAGATGGCGTCGTAGTCCACCACCAGCGGCGGCGCATTCCTGTCGACGTTCTGCGGCCCGTGCCGGCCACGGCCTTCACCCCGTTTTTGCTGCTGGCC‑‑CGCAGCCGGC‑GCGTCGGCCAGCAGCTTGTTCAGGCCTTCGCGGTACCACTCATAGGACCAGAACAGCCCGGTCAGGGCGAACAGAAGATAGAACAGCAGGCACCAGGTGCCGGCAACGGCGTGCAGGTCCCAGTTGAAGGCGCGGCCTTTCTTGGCCCAGTC  >  NC_002947/996800‑997082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.