New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1473183 =	27 (0.850)	5 (0.170)	5/236	NT	13.6%	coding (1045/1317 nt)	algD	GDP‑mannose 6‑dehydrogenase
	?	NC_002947	1473227 =	38 (1.260)					coding (1001/1317 nt)	algD	GDP‑mannose 6‑dehydrogenase

GTTGAGCAGCGACGACACGTGCGGGATCTTCGACTCGATGTAGTCCTTGTTGGCGCCGTGAACACGGGCGTACTGGACGTTCTCGTCGTAGATGTCCAGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGTTCTGCACCTGCGATTCGTTGCTGCGCATCAGCGAGTCGAGCAGCGGTGCACGGA  >  NC_002947/1473085‑1473374                                                                                                                                               |                                                                                                                                                    cagaacgccttcgagctgatcgaagcccacgacaagcgcaaggtcgccctgctgggcctgagcttcaaggccggcaccgacgacctgcgcgaaagcccGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTc                                                                                                                                              >  2:209225‑M1/99‑150 (MQ=255)    aacgccttcgagctgatcgaagcccacgacaagcgcaaggtcgccctgctgggcctgagcttcaaggccggcaccgacgacctgcgcgaaagccaGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCgg                                                                                                                                                    >  1:67001‑M1/96‑141 (MQ=255)    aacgccttcgagctgatcgaagcccacgacaagcgcaaggtcgccctgctgggcctgagcttcaaggccggcaccgacgacctgcgcgaaagccaGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCgg                                                                                                                                                    <  2:67001‑M1/46‑1 (MQ=255)      gcagcGACGACACGTGCGGGATCTTCGACTCGATGTAGTCCTTGTTGGCGCCGTGAACACGGGCGTACTGGACGTTCTCGTCGTAGATGTCCAGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCa                                                                                                                                         <  1:71562/150‑1 (MQ=255)      gcagcGACGACACGTGCGGGATCTTCGACTCGATGTAGTCCTTGTTGGCGCCGTGAACACGGGCGTACTGGACGTTCTCGTCGTAGATGTCCAGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCa                                                                                                                                         >  2:71562/1‑150 (MQ=255)                            cTTCGACTCGATGTAGTCCTTGTTGGCGCCGTGAACACGGGCGTACTGGACGTTCTCGTCGTAGATGTCCAGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGaa                                                                                                                   <  1:110637/150‑1 (MQ=255)                                   tCGATGTAGTCCTTGTTGGCGCCGTGAACACGGGCGTACTGGACGTTCTCGTCGTAGATGTCCAGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAgg                                                                                                            <  2:467866/150‑1 (MQ=255)                                            tCCTTGTTGGCGCCGTGAACACGGGCGTACTGGACGTTCTCGTCGTAGATGTCCAGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGgtcgt                                                                                                                                   >  2:22158/1‑118 (MQ=255)                                            tCCTTGTTGGCGCCGTGAACACGGGCGTACTGGACGTTCTCGTCGTAGATGTCCAGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGgtcgt                                                                                                                                   <  1:22158/118‑1 (MQ=255)                                            tCCTTGTTGGCGCCGTGAACACGGGCGTACTGGACGTTCTCGTCGTAGATGTCCAGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAgg                                                                                                   >  2:772637/1‑150 (MQ=255)                                             ccTTGTTGGCGCCGTGAACACGGGCGTACTGGACGTTCTAGTCGTAGATGTCCAGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAggg                                                                                                  >  1:363740/1‑150 (MQ=255)                                              cTTGTTGGCGCCGTGAACACGGGCGTACTGGACGTTCTCGTCGTAGATGTCCCGCTGGTAGCCCTTGCCGCTCAGGCGCTTGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGc                                                                                                 <  2:97591/150‑1 (MQ=255)                                                  ttgGCGCCGTGAACACGGGCGTACTGGACGTTCTCGTCGTAGATGTCCAGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGAcc                                                                                             >  1:18098/1‑150 (MQ=255)                                                    ggCGCCGTGAACACGGGCGTACTGGACGTTCTCGTCGTAGATGTCCAGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCtt                                                                                           <  2:344241/150‑1 (MQ=255)                                                             aaCACGGGCGTACTGGACGTTCTCGTCGTAGATGTCCAGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTc                                                                                  >  1:298876/1‑150 (MQ=255)                                                                acGGGCGTACTGGACGTTCTCGTCGTAGATGTCCAGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTg                                                                               <  1:772637/150‑1 (MQ=255)                                                                       tACTGGACGTTCTCGTCGTAGATGTCCAGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCg                                                                        >  1:97242/1‑150 (MQ=255)                                                                            gACGTTCTCGTCGTAGATGTCCAGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAg                                                                   >  1:387261/1‑150 (MQ=255)                                                                               gTTCTCGTCGTAGATGTCCAGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTc                                                                >  1:552740/1‑150 (MQ=255)                                                                               gTTCTCGTCGTAGATGTCCAGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTc                                                                >  2:761893/1‑150 (MQ=255)                                                                                     gtcgtAGATGTCCAGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGc                                                          >  1:422187/1‑150 (MQ=255)                                                                                        gtAGATGTCCAGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGtt                                                       >  1:41406/1‑150 (MQ=255)                                                                                        gtAGATGTCCAGCAGGTGGCCCTTGCCGAGGAGGTTCTCGGCGCGTTCTGGGAGCGGGCTTTCGCGCAGGTCGGCGGTGCCGGCCGTGAAGCTCAGGCCCAGGAGGGGGACCTTGCGGTGGGCGTGGGCTTGGATCAGGTGGAAGGCggt                                                       >  2:672663/1‑148 (MQ=255)                                                                                           gaaagcccgctggtggaactggccgagcgcctgatcggcaagggctaccagcGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGTTCTg                                                    >  2:209225‑M2/53‑150 (MQ=255)                                                                                               tCCAGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGTTCTGCAcc                                                >  2:546246/1‑150 (MQ=255)                                                                                                 ccgctggtggaactggccgagcgcctgatcggcaagggctaccagcTGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGtt                                                       >  1:67001‑M2/47‑141 (MQ=255)                                                                                                 ccgctggtggaactggccgagcgcctgatcggcaagggctaccagcTGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGtt                                                       <  2:67001‑M2/95‑1 (MQ=255)                                                                                                 cAGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGt                                                        >  1:428039/1‑140 (MQ=255)                                                                                                 cAGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGt                                                        <  2:428039/140‑1 (MQ=255)                                                                                                  aGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCt                                                                                                                       >  1:809713/1‑76 (MQ=255)                                                                                                  aGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCt                                                                                                                       <  2:809713/76‑1 (MQ=255)                                                                                                  aGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGTTCTGCACCTGc                                             <  2:387261/150‑1 (MQ=255)                                                                                                  aGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGTTCTGCACCTGc                                             >  1:174032/1‑150 (MQ=255)                                                                                                        TAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAgg                                                           <  1:391987‑M1/130‑1 (MQ=255)                                                                                                        TAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAgg                                                           >  2:391987‑M1/1‑130 (MQ=255)                                                                                                         ggaactggccgagcgcctgatcggcaagggctaccagcGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGTTCt                                                     <  2:659531‑M2/97‑1 (MQ=255)                                                                                                         ggaactggccgagcgcctgatcggcaagggctaccagcGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGTTCt                                                     >  1:659531‑M2/39‑135 (MQ=255)                                                                                                            ccTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTg                                                                               <  2:258812/106‑1 (MQ=255)                                                                                                            ccTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTg                                                                               >  1:258812/1‑106 (MQ=255)                                                                                                            ccTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGTTCTGCACCTGCGATTCGTtgc                                   <  2:422187/150‑1 (MQ=255)                                                                                                            ccTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGTTCTGCACCTGCGATTCGTtgc                                   >  2:442219/1‑150 (MQ=255)                                                                                                                    aTCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGTTCTGCACCTGCGATTCGTTGCTGCGCATc                           <  2:363740/150‑1 (MQ=255)                                                                                                                     tCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGTTCTGCACCTGCGATTCGTTGCTGCGCATCa                          >  1:670624/1‑150 (MQ=255)                                                                                                                     tCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGTTCTGCACCTGCGATTCGTTGCTGCGCATCa                          <  1:154553/150‑1 (MQ=255)                                                                                                                        ggCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGTTCTGCACCTGCGATTCGTTGCTGCGCATCAGCg                       >  2:174778/1‑150 (MQ=255)                                                                                                                         gcgcTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCTGTGCCGGCCTCCGAACGCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGTTCTGCACCTGCGATTCGTTGCTGCGCATCAGCGa                      <  1:8605/150‑1 (MQ=255)                                                                                                                           gcTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGTTCTGCACCTGCGATTCGTTGCTGCGCATCAGCGAGt                    <  2:552740/150‑1 (MQ=255)                                                                                                                                 ccAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGACTTCGATCAGCTCGAAGGCGTTCTGCACCTGCGATTCGTTGCTGCGCATCAGCGAGTCGacca              <  2:174032/150‑1 (MQ=255)                                                                                                                                      tCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGTTCTGCACCTGCGATTCGTTGCTGCGCATCAGCGAGTCGAGCAGCGGt         <  1:285847/150‑1 (MQ=255)                                                                                                                                         accagcGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGTTCTGCACCTGCGATTCGTTGCTGCGCATCAGCGAGTCGAGCAGCGGTGCa      >  1:94479‑M2/7‑150 (MQ=255)                                                                                                                                             gcGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGtt                                                       >  1:3134‑M2/3‑97 (MQ=255)                                                                                                                                             gcGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGtt                                                       <  2:3134‑M2/95‑1 (MQ=255)                                                                                                                                             gcGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGTTCTGCACCTGCGATTCGTTGCTGCGCATCAGCGAGTCGAGCAGCGGTGCACGGa  <  1:442219‑M2/148‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                    GTTGAGCAGCGACGACACGTGCGGGATCTTCGACTCGATGTAGTCCTTGTTGGCGCCGTGAACACGGGCGTACTGGACGTTCTCGTCGTAGATGTCCAGCTGGTAGCCCTTGCCGATCAGGCGCTCGGCCAGTTCCACCAGCGGGCTTTCGCGCAGGTCGTCGGTGCCGGCCTTGAAGCTCAGGCCCAGCAGGGCGACCTTGCGCTTGTCGTGGGCTTCGATCAGCTCGAAGGCGTTCTGCACCTGCGATTCGTTGCTGCGCATCAGCGAGTCGAGCAGCGGTGCACGGA  >  NC_002947/1473085‑1473374

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.