New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4884432	41 (1.290)	6 (0.210)	5/222	NT	14.5%	intergenic (+53/+76)	PP_4293/yedI	hypothetical protein/inner membrane protein
	?	NC_002947	= 4884469	34 (1.200)					intergenic (+90/+39)	PP_4293/yedI	hypothetical protein/inner membrane protein

CGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCTGCGAGGACTCCGACCCCGCCGTTGAGCAACGCACTGGTCAG  >  NC_002947/4884322‑4884618                                                                                                                                                    |                                                                                                                                                      cGATGCCTTCACTACCGACCAGAACCCCATGAGCTTCTTGGTCAAGCTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGgt                                                                                                                                                     >  1:185982‑M2/1‑148 (MQ=255)             tACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCACACGCGGTACCTGGTAGGAGCGGGTTc                                                                                                                                         >  1:669655/1‑150 (MQ=255)                 gACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCAccc                                                                                                                                     <  2:187546/150‑1 (MQ=255)                   ccAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCcgc                                                                                                                                   <  2:33902/150‑1 (MQ=255)                         cacCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCAGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGCACCg                                                                                                                             >  2:223588/1‑150 (MQ=255)                          acCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCgg                                                                                                                            <  1:559182/150‑1 (MQ=255)                          acCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCgg                                                                                                                            <  2:725502/150‑1 (MQ=255)                           ccATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCggg                                                                                                                           <  1:735437/150‑1 (MQ=255)                            cATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGATGATACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCgggg                                                                                                                          >  1:149048/1‑150 (MQ=255)                                   ttcttGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCCAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAgcg                                                                                                                   >  1:402003/1‑150 (MQ=255)                                      ttGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCt                                                                                                                >  1:447221/1‑150 (MQ=255)                                         gTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCaa                                                                                                             >  2:530451/1‑150 (MQ=255)                                          tCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAGACCGGTCACTGGTAGGAGCGGGGTCACCCGCGAACCGGGGCAAAGCGCCTCAAt                                                                                                            >  1:697171/1‑150 (MQ=38)                                          tCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAAt                                                                                                            >  1:92493/1‑150 (MQ=255)                                           cAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGTAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAAtt                                                                                                           <  1:445545/150‑1 (MQ=255)                                              ggTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGgtaggagcgg                                                                                                                                             >  1:638229‑M2/1‑103 (MQ=255)                                              ggTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGgtaggagcgg                                                                                                                                             <  2:638229‑M2/113‑11 (MQ=255)                                                  cACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTggccggc                                                                                                    <  1:530451/150‑1 (MQ=255)                                                   aCTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTggccggcc                                                                                                   >  1:301898/1‑150 (MQ=255)                                                     ttCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGa                                                                                                 >  1:726985/1‑150 (MQ=255)                                                            cTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAAccgccc                                                                                          <  1:25261/150‑1 (MQ=255)                                                                    gCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAAc                                                                                                                               >  1:381017/1‑105 (MQ=255)                                                                    gCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAAc                                                                                                                               <  2:381017/105‑1 (MQ=255)                                                                    gCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAAt                                                                                  <  1:142795/150‑1 (MQ=255)                                                                          ccGCTTTGCGGCCCATTCGCCAGTAAACCCGCTCCGACCGAGGACGCCCCGGGTAAGAGGCAAAGGCGCTACCTGGTAGGAGCCGGCTCACCCGCGGACCGGGGCAAACCGCCCCAATTGGCCGGCCGAACCCCGCGCCACACtttgcac                                                                            >  2:148740/1‑146 (MQ=255)                                                                                    gCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTa                                                                  >  1:647171/1‑150 (MQ=255)                                                                                    gCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTa                                                                  >  2:718326/1‑150 (MQ=255)                                                                                      ccATTCGCGGGTAAACCCGCTCCTCCAGGGGACGCGCCGGGTTCCAGGCAAACACGGTACCTGGTAGGAGCGGCCAGGTGCGCGAACCGGGGCAAAGCCCATCCATCGGCGGGCCGAACCGCCCGCCACAATTTCCGCGCAACGCTTatc                                                                >  1:405603/1‑148 (MQ=25)                                                                                       cATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTacca                                                               >  1:137761/1‑150 (MQ=255)                                                                                             cgGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCa                                                         <  2:149048/150‑1 (MQ=255)                                                                                                 tAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCAGCCAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGcac                                                     <  2:669655/150‑1 (MQ=255)                                                                                                     cccGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGgtaggagcgggtttacccgcgaatgggccgcaaagcggccccgctaactcaggtcagaagtgaaccttgaccaagaagctcatggtgttctggt                                                         <  1:139992‑M2/142‑95 (MQ=255)                                                                                                     cccGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGgtaggagcgggtttacccgcgaatgggccgcaaagcggccccgctaactcaggtcagaagtgaaccttgaccaagaagctcatggtgttctggt                                                         >  2:139992‑M2/1‑48 (MQ=255)                                                                                                      ccGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAg                                                >  2:790737/1‑150 (MQ=255)                                                                                                        gCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCa                                              >  1:513894/1‑150 (MQ=255)                                                                                                             tACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGgtaggagcgggtttacccgcgaatgggccgcaaagcggccccgctaactcaggtcagaagtgaaccttgaccaagaagctcatggtgttctggtcggtagtgaaggcatc                                         <  2:337802‑M2/150‑111 (MQ=255)                                                                                                             tACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGgtaggagcgggtttacccgcgaatgggccgcaaagcggccccgctaactcaggtcagaagtgaaccttgaccaagaagctcatggtgttctggtcggtagtgaaggcatc                                         <  2:403223‑M2/150‑111 (MQ=255)                                                                                                               cAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCTGCGa                                       <  2:17638/150‑1 (MQ=255)                                                                                                                aGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGgtaggagcgggtttacccgcgaatgggccgcaaagcggccccgctaactcaggtcagaagtgaaccttgaccaagaagctcatggtgttctggtcggtagtgaaggcatcgct                                      >  1:337802‑M2/1‑37 (MQ=255)                                                                                                                              gTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTCCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACACTTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCTGCGAGGACTCCGCCCccgc                        <  2:405603/150‑1 (MQ=255)                                                                                                                                  aaGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAAt                                                                                                            <  1:789450/62‑1 (MQ=255)                                                                                                                                  aaGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAAt                                                                                                            >  2:789450/1‑62 (MQ=255)                                                                                                                                    ggCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCTGCGAg                                      >  2:36028/1‑130 (MQ=255)                                                                                                                                    ggCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCTGCGAg                                      <  1:36028/130‑1 (MQ=255)                                                                                                                                      cAAACGCGGTACCTGgtaggagcgggtttacccgcgaatgggccgcaaagcggccccgctaactcaggtcagaagtgaaccttgaccaagaagctcatggtgttctggtcggtagtgaaggcatcgctgtccttgatgccgtacttgttc                >  1:403223‑M2/1‑15 (MQ=255)                                                                                                                                                   tGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCTGCGAGGACTCCGACCCCGCCGTTGAGCAACGCACTGGTCa   >  1:538351/1‑150 (MQ=255)                                                                                                                                                    ggTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCTGCGAGGACTCCGACCCCGCCGTTGAGCAACGCACTGGTCAg  <  2:137761/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CGATGCCTTCACTACCGACCAGAACACCATGAGCTTCTTGGTCAAGGTTCACTTCTGACCTGAGTTAGCGGGGCCGCTTTGCGGCCCATTCGCGGGTAAACCCGCTCCTACAGGGGACGCGCCGGGTTCAAGGCAAACGCGGTACCTGGTAGGAGCGGGTTCACCCGCGAACCGGGGCAAAGCGCCTCAATTGGCCGGCCGAACCGCCCGCCACAATTTCCCCGCAACGCTTACCACCGCCAGCACCACAGCACCTGCGAGGACTCCGACCCCGCCGTTGAGCAACGCACTGGTCAG  >  NC_002947/4884322‑4884618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.