New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	105504 =	4 (0.310)	3 (0.240)	3/258	1.3	35.8%	coding (298/720 nt)	cynT	carbonic anhydrase
	?	NC_002947	105533 =	7 (0.570)					coding (327/720 nt)	cynT	carbonic anhydrase

CCAACAGTAGGCATCTTGGTCAGCGACTGCGGGTTCAGTACCGCACGCATGGCGCCACAGTCGGAGTGGCCACAGATGATGATGTGGTGCACTTTAAGCGCCATTACGGCGTAC‑TCG‑‑ATGGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/105628‑105504 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggcgctTAAAGTGCACCACATCATCATCTGTGGCCACTCCGACTGTGGCGCCATGCGTGCGG  >  NC_002947/105533‑105588                                                                                                                                                                                          CCAACAGTAGGCATCTTGGTCAGCGACTGCGGGTTCAGTACCGCACGCATGGCGCCACAGTCGGAGTGGCCACAGATGATGATGTGGTGCACTTTAAGCGCCAT‑‑C‑GAGTACGCCGTAATGGCGCTTAAAGTGCACCACATCATCATCTGT                                 <  2:153741/150‑1                                                                                           ACTTTAAGCGCCATTACGGCGTAC‑TCG‑‑ATGGCGCTTAAAGTGCACCACATCATCATCTGTGGCCACTCCGACTGTGGCGCCATGCGTGCGG  >  1:84169/1‑91                                                                                           ACTTTAAGCGCCATTACGGCGTAC‑TCG‑‑ATGGCGCTTAAAGTGCACCACATCATCATCTGTGGCCACTCCGACTGTGGCGCCATGCGTGCGG  <  2:84169/91‑1                                                                                                                                                                                          CCAACAGTAGGCATCTTGGTCAGCGACTGCGGGTTCAGTACCGCACGCATGGCGCCACAGTCGGAGTGGCCACAGATGATGATGTGGTGCACTTTAAGCGCCATTACGGCGTAC‑TCG‑‑ATGGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/105628‑105504 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggcgctTAAAGTGCACCACATCATCATCTGTGGCCACTCCGACTGTGGCGCCATGCGTGCGG  >  NC_002947/105533‑105588

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.