| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 105504 = | 4 (0.310) | 3 (0.240) | 3/258 | 1.3 | 35.8% | coding (298/720 nt) | cynT | carbonic anhydrase |
| ? | NC_002947 | 105533 = | 7 (0.570) | coding (327/720 nt) | cynT | carbonic anhydrase | |||||
GCCGACTCGCGCATCGTTCCCGAGCTGATCACCCAGAGCTCGCCAGGCGACCTGTTCGTGACCCGTAACGTGGGTAACGTGGTACCGCCTTATGGCCAGATGAACGGGGGCGTTTCCAGCGCCAT‑‑CGA‑GTACGCCGTAATGGCGCTTAAAGTGCACCACATCATCATCTGTGGCCACTCCGACTGTGGCGCCATGCGTGCGGTACTGAACCCGCAGTCGCTGACCAAGATGCCTACTGTTGG > NC_002947/105387‑105628 | gCCGACTCGCGCATCGTTCCCGAGCTGATCACCCAGAGCTCGCCAGGCGACCTGTTCGTGACCCGTAACGTGGGTAACGTGGTACCGCCTTATGGCCAGATGAACGGGGGCGTTTCCAGCGCCAT‑‑CGA‑GTACGCCGTAATGGCGCTTaaa < 1:223680/150‑1 (MQ=255) aGCTGATCACCCAGAGCTCGCCAGGCGACCTGTTCGTGACCCGTAACGTGGGTAACGTGGTACCGCCTTATGGCCAGATGAACGGGGGCGTTTCCAGCGCCAT‑‑CGA‑GTACGCCGTAATGGCGCTTAAAGTGCACCACATCATCATCtgtg < 2:133559/150‑1 (MQ=255) cTGTTCGTGTCCCGTAACGTGGGTAACGTGGTACCGCCTTATGGCCAGATGAACGGGGGCGTTTCCAGCGCCAT‑‑CGA‑GTACGCCGTAATGGCGCTTAAAGTGCACCACATCATCATCTGTGGCCACTCCGACTGTGGCGCCAtgcgtgcg < 1:52130/150‑1 (MQ=255) ccgcacgcatggcgccacagtcggagtggccacagatgatgatgtggtgcactttaAGCGCCAT‑‑CGA‑GTACGCCGTAATGGCGCTTAAAGt > 1:84169‑M1/57‑91 (MQ=255) ccgcacgcatggcgccacagtcggagtggccacagatgatgatgtggtgcactttaAGCGCCAT‑‑CGA‑GTACGCCGTAATGGCGCTTAAAGt < 2:84169‑M1/35‑1 (MQ=255) ttATGGCCAGATGAACGGGGGCGTTTCCAGCGCCAT‑‑CGA‑GTACGCCGTAATGGCGCTTAAAGTGCACCACATCATCATCTGTGGCCACTCCGACTGTGGCGCCATGCGTGCGGTACTGAACCCGCAGTCGCTGACCAAGATGCCTACTGt > 2:236180/1‑150 (MQ=255) acagatgatgatgtggtgcactttaAGCGCCATTACGGCGTACTC‑G‑‑ATGGCGCTTAAAGTGCACCACATCATCATCTGTGGCCACTCCGACTGTGGCGCCATGCGTGCGGTACTGAACCCGCAGTCGCTGACCAAGATGCCTACTGTTgg < 2:153741‑M1/125‑1 (MQ=255) | GCCGACTCGCGCATCGTTCCCGAGCTGATCACCCAGAGCTCGCCAGGCGACCTGTTCGTGACCCGTAACGTGGGTAACGTGGTACCGCCTTATGGCCAGATGAACGGGGGCGTTTCCAGCGCCAT‑‑CGA‑GTACGCCGTAATGGCGCTTAAAGTGCACCACATCATCATCTGTGGCCACTCCGACTGTGGCGCCATGCGTGCGGTACTGAACCCGCAGTCGCTGACCAAGATGCCTACTGTTGG > NC_002947/105387‑105628 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |