New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	105504 =	4 (0.310)	3 (0.240)	3/258	1.3	35.8%	coding (298/720 nt)	cynT	carbonic anhydrase
	?	NC_002947	105533 =	7 (0.570)					coding (327/720 nt)	cynT	carbonic anhydrase

GCCGACTCGCGCATCGTTCCCGAGCTGATCACCCAGAGCTCGCCAGGCGACCTGTTCGTGACCCGTAACGTGGGTAACGTGGTACCGCCTTATGGCCAGATGAACGGGGGCGTTTCCAGCGCCAT‑‑CGA‑GTACGCCGTAATGGCGCTTAAAGTGCACCACATCATCATCTGTGGCCACTCCGACTGTGGCGCCATGCGTGCGGTACTGAACCCGCAGTCGCTGACCAAGATGCCTACTGTTGGCGCCTGGTTGCGCCACGCTGAAGTGGCCCGCACCGTGGTCGAGAA  >  NC_002947/105387‑105673                                                                                                                                                      |                                                                                                                                             gCCGACTCGCGCATCGTTCCCGAGCTGATCACCCAGAGCTCGCCAGGCGACCTGTTCGTGACCCGTAACGTGGGTAACGTGGTACCGCCTTATGGCCAGATGAACGGGGGCGTTTCCAGCGCCAT‑‑CGA‑GTACGCCGTAATGGCGCTTaaa                                                                                                                                           <  1:223680/150‑1 (MQ=255)                       aGCTGATCACCCAGAGCTCGCCAGGCGACCTGTTCGTGACCCGTAACGTGGGTAACGTGGTACCGCCTTATGGCCAGATGAACGGGGGCGTTTCCAGCGCCAT‑‑CGA‑GTACGCCGTAATGGCGCTTAAAGTGCACCACATCATCATCtgtg                                                                                                                     <  2:133559/150‑1 (MQ=255)                         ccaacagtaggcatcttggtcagcgactgcgggttcagtaccgcacgcatggcgccacagtcggagtggccacagatgatgatgtggtgcactttaagcgccatcgagtacgccgtaatggcgctTAAAGTGCACCACATCATCATCtgt                                                                                                                      <  2:153741‑M2/25‑1 (MQ=255)                                                    cTGTTCGTGTCCCGTAACGTGGGTAACGTGGTACCGCCTTATGGCCAGATGAACGGGGGCGTTTCCAGCGCCAT‑‑CGA‑GTACGCCGTAATGGCGCTTAAAGTGCACCACATCATCATCTGTGGCCACTCCGACTGTGGCGCCAtgcgtgcg                                                                                        <  1:52130/150‑1 (MQ=255)                                                              ccgcacgcatggcgccacagtcggagtggccacagatgatgatgtggtgcactttaAGCGCCAT‑‑CGA‑GTACGCCGTAATGGCGCTTAAAGt                                                                                                                                         >  1:84169‑M1/57‑91 (MQ=255)                                                              ccgcacgcatggcgccacagtcggagtggccacagatgatgatgtggtgcactttaAGCGCCAT‑‑CGA‑GTACGCCGTAATGGCGCTTAAAGt                                                                                                                                         <  2:84169‑M1/35‑1 (MQ=255)                                                                                          ttATGGCCAGATGAACGGGGGCGTTTCCAGCGCCAT‑‑CGA‑GTACGCCGTAATGGCGCTTAAAGTGCACCACATCATCATCTGTGGCCACTCCGACTGTGGCGCCATGCGTGCGGTACTGAACCCGCAGTCGCTGACCAAGATGCCTACTGt                                                  >  2:236180/1‑150 (MQ=255)                                                                                             acagatgatgatgtggtgcactttaAGCGCCATTACGGCGTACTC‑G‑‑ATGGCGCTTAAAGTGCACCACATCATCATCTGTGGCCACTCCGACTGTGGCGCCATGCGTGCGGTACTGAACCCGCAGTCGCTGACCAAGATGCCTACTGTTgg                                               <  2:153741‑M1/125‑1 (MQ=255)                                                                                                                   actttaagcgccattacggcgtactcgatggcgctTAAAGTGCACCACATCATCATCTGTGGCCACTCCGACTGTGGCGCCATGCGTGCgg                                                                                       >  1:84169‑M2/36‑91 (MQ=255)                                                                                                                   actttaagcgccattacggcgtactcgatggcgctTAAAGTGCACCACATCATCATCTGTGGCCACTCCGACTGTGGCGCCATGCGTGCgg                                                                                       <  2:84169‑M2/56‑1 (MQ=255)                                                                                                                                        gCCGTAATGGCGCTTAAAGTGCACCACATCATCATCTGTGGCCACTCCGACTGTGGCGCCATGCGTGCGGTACTGAACCCGCAGTCGCTGACCAAGATGCCTACTGTTGgcgc                                            <  1:269854/113‑1 (MQ=255)                                                                                                                                        gCCGTAATGGCGCTTAAAGTGCACCACATCATCATCTGTGGCCACTCCGACTGTGGCGCCATGCGTGCGGTACTGAACCCGCAGTCGCTGACCAAGATGCCTACTGTTGgcgc                                            >  2:269854/1‑113 (MQ=255)                                                                                                                                             aaTGGCGCTTAAAGTGCACCACATCATCATCTGTGGCCACTCCGACTGTGGCGCCATGCGTGCGGTACTGAACCCGCAGTCGCTGACCAAGATGCCTACTGTTGGCGCCTGGTTGCGCCACGCTGAAGTGGCCCGCACCGTGGTCGAGaa  <  1:236180/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                             GCCGACTCGCGCATCGTTCCCGAGCTGATCACCCAGAGCTCGCCAGGCGACCTGTTCGTGACCCGTAACGTGGGTAACGTGGTACCGCCTTATGGCCAGATGAACGGGGGCGTTTCCAGCGCCAT‑‑CGA‑GTACGCCGTAATGGCGCTTAAAGTGCACCACATCATCATCTGTGGCCACTCCGACTGTGGCGCCATGCGTGCGGTACTGAACCCGCAGTCGCTGACCAAGATGCCTACTGTTGGCGCCTGGTTGCGCCACGCTGAAGTGGCCCGCACCGTGGTCGAGAA  >  NC_002947/105387‑105673

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.