New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5111564 =	17 (1.300)	4 (0.320)	4/260	1.1	21.0%	coding (896/1068 nt)	rluB	23S rRNA pseudouridylate synthase B
	?	NC_002947	5111604 =	14 (1.130)					coding (856/1068 nt)	rluB	23S rRNA pseudouridylate synthase B

GAAATCGACATCCTCGCCGCCGAAGTGGGCCTGCAGCCGGTCGCGCTGCCAGCCATGAAGCTCAAGGCCAAGGACAAGATGGAGCGCCTGCAGCGCAAGTCGACCCGCCCGCTGGGCCGTGGCGAGCGCGTGCGCAACCTGCGCCCGGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5111715‑5111564 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcccaGCGGGCGGGTCGACTTGCGCTGCAGGCGCTCCATCTTGTCCTTGGCCTTGAGCTTCATGGCTGGCAGCGCGACCGGCTGCAGGCCCACTTCGGCGGCGAGGATGTCGATTTCGCCCTGGGTCATTTCGCGCCAGCGGCCCATCGGCAGG  >  NC_002947/5111604‑5111752                                                                                                                                                                                                                                                                                                               GAAATCGACATCCTCGCCGCCGAAGTGGGCCTGCAGCCGGTCGCGCTGCCAGCCATGAAGCTCAAGGCCAAGGACAAGATGGAGCGCCTGCAGCGCAAGTCGACCCGCCCGCTGGGCCGTGGCGAGCGCGTGCGCAACCTGCGCCCGGCC                                                                                                                                                         <  1:186000/150‑1                                                                                                         CCGCCCGCTGGGCCGTGGCGAGCGCGTGCGCAACCTGCGCCCGGCCCAGCGGGCGGGTCGACTTGCGCTGCAGGCGCTCCATCTTGTCCTTGGC                                                                                                         >  1:171613/1‑94                                                                                                         CCGCCCGCTGGGCCGTGGCGAGCGCGTGCGCAACCTGCGCCCGGCCCAGCGGGCGGGTCGACTTGCGCTGCAGGCGCTCCATCTTGTCCTTGGC                                                                                                         <  2:171613/94‑1                                                                                                                   GGCCGTGGCGAGCGCGTGCGCAACCTGCGCCCGGCCCAGCGGGCGGGTCGACTTGCGCTGCAGGCGCTCCATCTTGTCCTTGGCCTTGAGCTTCATGGCTGGCAGCGCGACCGGCTGCAGGCCCACTTCGGCGGCGAGGATGTCGATTTC                                       >  2:207626/1‑150                                                                                                                                            TGCGCCCGGCCCAGCGGGCGGGTCGACTTGCGCTGCAGGCGCTCCATCTTGTCCTTGGCCTTGAGCTTCATGGCTGGCAGCGCGACCGGCTGCAGGCCCACTTCGGCGGCGAGGATGTCGATTTCGCCCTGGGTCATTTCGCGCCAGCGG              <  1:207626/150‑1                                                                                                                                                      CCAGCGGGCGGGTCGACTTGCGCTGCAGGCGCTCCATCTTGTCCTTGGCCTTGAGCTTCATGGCTGGCAGCG                                                                                  <  1:11166/72‑1                                                                                                                                                      CCAGCGGGCGGGTCGACTTGCGCTGCAGGCGCTCCATCTTGTCCTTGGCCTTGAGCTTCATGGCTGGCAGCG                                                                                  >  2:11166/1‑72                                                                                                                                                        AGCGGGCGGGTCGACTTGCGCTGCAGGCGCTCCATCTTGTCCTTGGCCTTGAGCTTCATGGCTGGCAGCGCGACCGGCTGCAGGCCCACTTCGGCGGCGAGGATGTCGATTTCGCCCTGGGTCATTTCGCGCCAGCGGCCCATCGGCAGG  <  2:119989/150‑1                                                                                                                                                                                                                                                                                                               GAAATCGACATCCTCGCCGCCGAAGTGGGCCTGCAGCCGGTCGCGCTGCCAGCCATGAAGCTCAAGGCCAAGGACAAGATGGAGCGCCTGCAGCGCAAGTCGACCCGCCCGCTGGGCCGTGGCGAGCGCGTGCGCAACCTGCGCCCGGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5111715‑5111564 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcccaGCGGGCGGGTCGACTTGCGCTGCAGGCGCTCCATCTTGTCCTTGGCCTTGAGCTTCATGGCTGGCAGCGCGACCGGCTGCAGGCCCACTTCGGCGGCGAGGATGTCGATTTCGCCCTGGGTCATTTCGCGCCAGCGGCCCATCGGCAGG  >  NC_002947/5111604‑5111752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.