New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2247118 =	7 (0.540)	3 (0.240)	3/262	1.3	26.4%	coding (2524/3297 nt)	PP_1983	PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
	?	NC_002947	2247154 =	10 (0.800)					coding (2488/3297 nt)	PP_1983	PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase

CTGCGAGGGCGGTTGCTGACCCAGTTGCGGGTGGTGCCAGCGCAACAGTACTTCGGCACCGACGATGCGGTTGTCGCGGGCATCCACCTGCGGCTGGAAGTGCAGTGCCAGCTCGCCACGGGCCAGGGCCAGGCGCAGGTCGTTTTCCATGCGCAGGCGCTCGCTGGCGGCCTTCTGCATGGTGGTGTGAAACAGCTGGGTGGTGTTGCGACCGGAGTCCTTGGCCCGGTACAGGGCGATATCGGCACGTTTGAGCAGGTCGGCCGGTGTGGTGCCGTGGTCGGGGATCAGC  >  NC_002947/2246972‑2247263                                                                                                                                                   |                                                                                                                                                  ccagcgcctgcaggtaacgcccagcatcggcgtggcgctgatccccgaccacggcaccacaccggccgacctgctcaaacgtgccgatatcgccctgtaccgggccaaggactccggtcgcaacaccacccagctgtttcacaccaCCAt                                                                                                                                                <  1:141925‑M1/4‑1 (MQ=255)                                 tggcgctgatccccgaccacggcaccacaccggccgacctgctcaaacgtgccgatatcgccctgtaccgggccaaggactccggtcgcaacaccacccagctgtttcacaccaCCATGCGCAGGCGCTCGCTGGCGGCCTTCTGCAtgg                                                                                                                >  2:141925‑M1/115‑150 (MQ=255)                                          gcAACAGTACTTCGGCACCGACGATGCGGTTGTCGCGGGCATCCACCTGCGGCTGGAAGTGCAGTGCCAGCTCGCCACGGGCCAGGGCCAGGCGCAGGTCGTTTTCCATGCGCAGGCGCTCGCTGGCGGCCTTCTGCATGGTGGTGTGaa                                                                                                       >  1:251464/1‑150 (MQ=255)                                                  aCTTCGGCACCGACGATGCGGTTGTCGCGGGCATCCACCTGCGGCTGGAAGTGCAGTGCCAGCTCGCCACGGGCCAGGGCCAGGCGCAGGTCGTTTTCCATGCGCAGGCGCTCGCTGGCGGCCTTCTGCATGGTGGTGTGAAACAGCTgg                                                                                               <  1:273351/150‑1 (MQ=255)                                                                                        cTGCGGCTGGAAGTGCAGTGCCAGCTCGCCACGGGCCAGGGCCAGGCGCAGGTCGTTTTCCATGCGCAGGCGCTCGCTGGCGGCCTTCTGCATGGTGGTGTGAAACAGCTGGGTGGTGTTGCGACCGGAGTCCTTGGCCCGGTACAGGGc                                                         <  2:36732/150‑1 (MQ=255)                                                                                             gCTGGAAGTGCAGTGCCAGCTCGCCACGGGCCAGGGCCAGGCGCAGGTCGTTTTCCATGCGCAGGCGCTCGCTGGCGGCCTTCTGCATGGTGGTGTGAAACAGCTGGGTGGTGTTGCGACCGGAGTCCTTGGCCCGGTACAGGGCGatat                                                    >  1:93406/1‑150 (MQ=255)                                                                                                    ccgggccaaggactccggtcgcaacaccacccagctgtttcacaccaCCATGCGCAGGCGCTCGCTGGCGGCCTTCTGCAtg                                                                                                                 >  1:5991‑M1/48‑82 (MQ=255)                                                                                                    ccgggccaaggactccggtcgcaacaccacccagctgtttcacaccaCCATGCGCAGGCGCTCGCTGGCGGCCTTCTGCAtg                                                                                                                 <  2:5991‑M1/35‑1 (MQ=255)                                                                                                                      aCGGGCCAGGGCCAGGCGCAGGTCGTTTTCCATGCGCAGGCGCTCGCTGGCGGCCTTCTGCATGGTGGTGTGAAACAGCTGGGTGGTGTTGCGACCGGAGTCCTTGGCCCGGTACAGGGCGatat                                                    >  1:131682/1‑125 (MQ=255)                                                                                                                      aCGGGCCAGGGCCAGGCGCAGGTCGTTTTCCATGCGCAGGCGCTCGCTGGCGGCCTTCTGCATGGTGGTGTGAAACAGCTGGGTGGTGTTGCGACCGGAGTCCTTGGCCCGGTACAGGGCGatat                                                    <  2:131682/125‑1 (MQ=255)                                                                                                                                               ttttCCATGCGCAGGCGCTCGCTGGCGGCCTTCTGCATGGTGGTGTGAAACAGCTGGGTGGTGTTGCGACCGGAGTCCTTGGCCCGGTACAGGGCGATATCGGCACGTTTGAGCAGGTCGGCCGGTGTGGTGCCGTGGTCGGGGATCAgc  <  2:149157/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                  CTGCGAGGGCGGTTGCTGACCCAGTTGCGGGTGGTGCCAGCGCAACAGTACTTCGGCACCGACGATGCGGTTGTCGCGGGCATCCACCTGCGGCTGGAAGTGCAGTGCCAGCTCGCCACGGGCCAGGGCCAGGCGCAGGTCGTTTTCCATGCGCAGGCGCTCGCTGGCGGCCTTCTGCATGGTGGTGTGAAACAGCTGGGTGGTGTTGCGACCGGAGTCCTTGGCCCGGTACAGGGCGATATCGGCACGTTTGAGCAGGTCGGCCGGTGTGGTGCCGTGGTCGGGGATCAGC  >  NC_002947/2246972‑2247263

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.