New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5257895 =	12 (0.920)	5 (0.410)	4/256	1.1	24.9%	intergenic (‑46/+98)	PP_4634/PP_4635	alpha/beta family hydrolase/trans‑2‑enoyl‑CoA reductase
	?	NC_002947	5257986 =	19 (1.560)					intergenic (‑137/+7)	PP_4634/PP_4635	alpha/beta family hydrolase/trans‑2‑enoyl‑CoA reductase

TGGGGATCAGGTTGGGCGTGGCGCCAGCAGAAGCCGCCGAGGCTGTATCCGTCGGCCGCGGGGTGGCGAAATGGGGTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGT  >  NC_002947/5257749‑5258033                                                                                                                                                   |                                                                                                                                           caccgagaacctgttcgagctgactgactacgccggttacaagaagcagttcctcaacctgttcggcttcgagcgcgctgacgttgactacgacaaagacgtggccaccgatgtgaagttcgactgcgtcgagctgtaatcgggtaAGcc                                                                                                                                         <  1:162751‑M1/4‑1 (MQ=255)                  gTGGCGCCAGCAGAAGCCGCCGAGGCTGTATCCGTCGGCCGCGGGGTGGCGAAATGGGGTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTcgc                                                                                                                        >  2:111729/1‑150 (MQ=255)                               aaGCCGCCGAGGCTGTATCCGTCGGCCGCGGGGTGGCGAAATGGGGTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACTCGCt                                                                                                           >  2:205397/1‑150 (MQ=255)                                           cTGTACCCGTCGGCCGCGGGGGGGCGCAATGGGGCCGCGGGTTGGATGAGACTGGTCATGGCGCATGTGCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGACCACGCGCCTACAGGGGga                                                                                               >  2:259147/1‑150 (MQ=255)                                                   tcctcaacctgttcggcttcgagcgcgctgacgttgactacgacaaagacgtggccaccgatgtgaagttcgactgcgtcgagctgtaatcgggtaAGCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGAGAACCtgt                                                                                       >  2:162751‑M1/97‑150 (MQ=255)                                                                            gTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGCACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAgg                                                              >  2:219048/1‑150 (MQ=255)                                                                               tgacgttgactacgacaaagacgtggccaccgatgtgaagttcgactgcgtcgagctgtaatcgggtaAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAagag                                                               >  2:279247‑M1/69‑146 (MQ=255)                                                                               tgacgttgactacgacaaagacgtggccaccgatgtgaagttcgactgcgtcgagctgtaatcgggtaAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAagag                                                               <  1:279247‑M1/78‑1 (MQ=255)                                                                               gCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGCGCGGGCTTGCCCGCGAAGAGGCCg                                                           >  1:52973/1‑150 (MQ=255)                                                                                        ctacgacaaagacgtggccaccgatgtgaagttcgactgcgtcgagctgtaatcgggtaAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAg                                                     <  1:13728‑M1/88‑1 (MQ=255)                                                                                        ctacgacaaagacgtggccaccgatgtgaagttcgactgcgtcgagctgtaatcgggtaAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAg                                                     >  2:13728‑M1/60‑147 (MQ=255)                                                                                               tACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTAc                                                       <  2:281954/138‑1 (MQ=255)                                                                                               tACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTAc                                                       >  1:281954/1‑138 (MQ=255)                                                                                                  tCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGTCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGAGAACCTGTTGGAGCGGGCTTGCCCGCGAAGAGGCCGGGACGGGCTTACCCGAtga                                        >  1:100622/1‑148 (MQ=38)                                                                                                       gcgcATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGTTGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCt                                   >  1:70494/1‑150 (MQ=255)                                                                                                                 tgttgttgtGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAaga                                                                <  2:258460/111‑1 (MQ=255)                                                                                                                 tgttgttgtGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAaga                                                                >  1:258460/1‑111 (MQ=255)                                                                                                                                        aaaGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGt  >  1:119438/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                           TGGGGATCAGGTTGGGCGTGGCGCCAGCAGAAGCCGCCGAGGCTGTATCCGTCGGCCGCGGGGTGGCGAAATGGGGTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGT  >  NC_002947/5257749‑5258033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.