New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5257895 =	12 (0.920)	5 (0.410)	4/256	1.1	24.9%	intergenic (‑46/+98)	PP_4634/PP_4635	alpha/beta family hydrolase/trans‑2‑enoyl‑CoA reductase
	?	NC_002947	5257986 =	19 (1.560)					intergenic (‑137/+7)	PP_4634/PP_4635	alpha/beta family hydrolase/trans‑2‑enoyl‑CoA reductase

TCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATC‑GGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAGTCAGCTCGAACAGGTTCTCGGTG  >  NC_002947/5257846‑5258131                                                                                                                                             |                                                                                                                                                   tCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGTCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGAGAACCTGTTGGAGCGGGCTTGCCCGCGAAGAGGCCGGGACGGGCTTACCCGAtga                                                                                                                                           >  1:100622/1‑148 (MQ=38)      gcgcATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGTTGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCt                                                                                                                                      >  1:70494/1‑150 (MQ=255)                                       aaaGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATC‑GGTGGCCACGt                                                                                                    >  1:119438/1‑150 (MQ=255)                                                    CCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATC‑GGTGGCCACGTCTTTGTCGTAGTc                                                                                       <  1:290790‑M1/150‑1 (MQ=255)                                                     ctgtaccggcctcttcgcgggcaagcccgctcccacaggttctccccctgtaggagcgggttcacccgcgaagaggccagtacaggctTACCCGATTACAGCTCGACGCAGTCGAACTTCACATC‑GGTGGCCACGTCTTTGTCGTAg                                                                                         >  2:13728‑M2/89‑147 (MQ=255)                                                     ctgtaccggcctcttcgcgggcaagcccgctcccacaggttctccccctgtaggagcgggttcacccgcgaagaggccagtacaggctTACCCGATTACAGCTCGACGCAGTCGAACTTCACATC‑GGTGGCCACGTCTTTGTCGTAg                                                                                         <  1:13728‑M2/59‑1 (MQ=255)                                                      TGTACTGGCCTCTTCGCGGGTGAACTCGCTCCTACAGGGGGAGAACCTGTGGGAGCTGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATC‑GGTGGCCACGTCTTTGTCGTAGTCaa                                                                                     >  1:205397‑M1/1‑150 (MQ=255)                                                               ctcttcgcgggcaagcccgctcccacaggttctccccctgtaggagcgggttcacccgcgaagaggccagtacaggctTACCCGATTACAGCTCGACGCAGTCGAACTTCACATC‑GGTGGCCACGTCTTTGTCGTAGTCAACGTCa                                                                                <  1:279247‑M2/68‑1 (MQ=255)                                                               ctcttcgcgggcaagcccgctcccacaggttctccccctgtaggagcgggttcacccgcgaagaggccagtacaggctTACCCGATTACAGCTCGACGCAGTCGAACTTCACATC‑GGTGGCCACGTCTTTGTCGTAGTCAACGTCa                                                                                >  2:279247‑M2/79‑146 (MQ=255)                                                                  ttCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAAc                                                                                                                        <  1:235646/104‑1 (MQ=255)                                                                  ttCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAAc                                                                                                                        >  2:235646/1‑104 (MQ=255)                                                                          tGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATC‑GGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCg                                                                 >  2:80089/1‑150 (MQ=255)                                                                              cccGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATC‑GGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACa                                                             <  1:219048/150‑1 (MQ=255)                                                                              cccGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATC‑GGTGGCCACGTCTTTATCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACa                                                             >  1:125018/1‑150 (MQ=255)                                                                                      tACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATC‑GGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAgg                                                     >  2:190642/1‑150 (MQ=255)                                                                                      tACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATC‑GGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAgg                                                     <  2:52973/150‑1 (MQ=255)                                                                                       acaggttctccccctgtaggagcgggcttgcccgcgaagaggccggtacaggctTACCCGATTACAGCTCGACGCAGTCGAACTTCACATC‑GGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGa                                                    >  2:162751‑M2/55‑150 (MQ=255)                                                                                         aGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATC‑GGTGGCCACGTCTTTGTCGTAGTAAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAAc                                                  >  1:270668/1‑150 (MQ=255)                                                                                             ggAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAA‑ATAACGGCAGATGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGct                                              >  1:176461/1‑150 (MQ=38)                                                                                              gagaACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATC‑GGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGctt                                             >  1:17688/1‑150 (MQ=255)                                                                                                     tgtgGGAGCGGGCCTGCCGGCGAAGGGCACGGTACATGCTTACCCGATCACAGCTCGACACAGTCGAACTTCACTTC‑GGTGGCCACGTCTTTGTCGGAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTaa                                      <  2:100622/150‑1 (MQ=255)                                                                                                                gCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATC‑GGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTagtc                           >  1:307796/1‑150 (MQ=255)                                                                                                                     cccGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATC‑GGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAAACGGCGTAgtcagtca                      >  1:13363/1‑150 (MQ=255)                                                                                                                      ccGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATC‑GGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGtcagtcag                     >  2:159152/1‑150 (MQ=255)                                                                                                                       cgcgAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATC‑GGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAGTCAGc                    <  2:70494/150‑1 (MQ=255)                                                                                                                               ggCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATC‑GGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAGTCAGCTCGAACAg            <  1:190642/150‑1 (MQ=255)                                                                                                                                         ggctTACCCGATTACAGCTCGACGCAGTCGAACTTCACATC‑GGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAGTCAGCTCGAACAGGTTCTCggtg  <  1:162751‑M2/146‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                   TCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATC‑GGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAGTCAGCTCGAACAGGTTCTCGGTG  >  NC_002947/5257846‑5258131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.