New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	337784 =	58 (1.330)	15 (0.440)	14/208	1.6	29.5%	intergenic (‑31/+98)	PP_0279/PP_0280	hypothetical protein/amino acid ABC transporter permease
	?	NC_002947	337868 =	26 (0.750)					intergenic (‑115/+14)	PP_0279/PP_0280	hypothetical protein/amino acid ABC transporter permease

GTGATCTCGTTCATGCTGGTGCAAGGCTTCAAGCTGCTGGAGCGCTGGTTGCGCGTGGATGCCTGCCAAGGCCGCTGAGACCTCACTGACTGCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/337959‑337784 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctgtgggagcgggcgtgcccgcgaagCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGTAGAACACGCCTGCGGCGAAGAAGATTTCCACCGGCAGGTAGGTGCG  >  NC_002947/337868‑338010                                                                                                                                                                                                                                                                                                                                  GTGATCTCGTTCATGCTGGTGCAAGGCTTCAAGCTGCTGGAGCGCTGGTTGCGCGTGGATGCCTGCCAAGGCCGCTGAGACCTCACTGACTGCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATAC                                                                                                                                                                           <  2:454702/150‑1     TCTCGTTCATGCTGGTGCAAGGCTTCAAGCTGCTGGAGCGCTGGTTGCGCGTGGATGCCTGCCAAGGCCGCTGAGACCTCACTGACTGCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGT                                                                                                                                                                       <  2:932803/150‑1     TCTCGTTCATGCTGGTGCAAGGCTTCAAGCTGCTGGAGCGCTGGTTGCGCGTGGATGCCTGCCAAGGCCGCTGAGACCTCACTGACTGCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGT                                                                                                                                                                       <  1:158829/150‑1      CTCGTTCATGCTGGTGCAAGGCTTCAAGCTGCTGGAGCGCTGGTTGCGCGTGGATGCCTGCCAAGGCCGCTGAGACCTCACTGACTGCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTG                                                                                                                                                                      <  2:743668/150‑1       TCGTTCATGCTGGTGCAAGGCTTCAAGCTGCTGGAGCGCTGGTTGCGCGTGGATGCCTGCCAAGGCCGCTGAGACCTCACTGACTGCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGG                                                                                                                                                                     <  1:431994/150‑1             ATGCTGGTGCAAGGCTTCAAGCTGCTGGAGCGCTGGTTGCGCGTGGATGCCTGCCAAGGCCGCTGAGACCTCACTGACTGCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGG                                                                                                                                                               <  1:506375/150‑1              TGCTGGTGCAAGGCTTCAAGCTGCTGGAGCGCTGGTTGCGCGTGGATGCCTGCCAAGGCCGCTGAGACCTCACTGACTGCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGG                                                                                                                                                              <  2:1079545/150‑1                       AAGGCTTCAAGCTGCTGGAGTGCTGGTTGCGCGTGGATTCCTGCCAAGGCCGCTGAGACCTCACTGACTGCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGC                                                                                                                                                     >  2:659473/1‑150                       AAGGCTTCAAGCTGCTGGAGCGCTGGTTGCGCGTGGATTCCTGCCAAGGCCGCTGAGACCTCACTGACTGCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGC                                                                                                                                                     >  2:659585/1‑150                        AGGCTTCAAGCTGCTGGAGCGCTGGTTGCGCGTGGATGCCTGCCAAGGCCACTGAGACCTCACTGACTGCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGTAGCGGGCGTGCCCGCG                                                                                                                                                    >  2:36650/1‑150                                                GTTGCGCGTGGATGCCTGCCAAGGCCGCTGAGACCTCACTGACTGCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCAGGCGTGCCCGCGAAGCA                                                                                                                                               <  1:86078/131‑1                                                GTTGCGCGTGGATGCCTGCCAAGGCCGCTGAGACCTCACTGACTGCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCAGGCGTGCCCGCGAAGCA                                                                                                                                               >  2:86078/1‑131                                                                                                           CCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATAC                                                                                                                                                                           <  2:868775/44‑1                                                                                                           CCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATAC                                                                                                                                                                           >  1:868775/1‑44                                                                                                                 CCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGG                                                                                                                      >  2:558537/1‑91                                                                                                                 CCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGG                                                                                                                      <  1:558537/91‑1                                                                                                                 CCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGT                                                                                                                                                                       <  1:192831/42‑1                                                                                                                 CCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGT                                                                                                                                                                       >  2:192831/1‑42                                                                                                                   ACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAG                                                                                                                   <  2:861093/92‑1                                                                                                                   ACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAG                                                                                                                   >  1:861093/1‑92                                                                                                                   ACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCT                                                                                                                         <  1:1047585/86‑1                                                                                                                   ACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCT                                                                                                                         <  2:320346/86‑1                                                                                                                   ACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCT                                                                                                                         >  2:1047585/1‑86                                                                                                                   ACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCT                                                                                                                         >  1:320346/1‑86                                                                                                                      GGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAAC                                                             <  2:200877/143‑1                                                                                                                      GGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAAC                                                             >  1:200877/1‑143                                                                                                                            GCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGT                                                >  2:591013/1‑150                                                                                                                             CGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGTA                                               <  1:591013/150‑1                                                                                                                                               GCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGTAGAACACGCCTGCGGCGA                              <  1:1079545/150‑1                                                                                                                                                         TGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGTAGAACACGCCTGCGGCGAAGAAGATTTC                    >  1:224486/1‑150                                                                                                                                                           TGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGTAGACCACGCCTTTGGCGAAGAAGATTTCCA                  >  2:529043/1‑150                                                                                                                                                           TGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGTAGAACACGCCTGCGGCGAAGAAGATTTCCA                  <  2:431994/150‑1                                                                                                                                                           TGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGTAGAACACGCCTGCGGCGAAGAAGATTTCCA                  >  1:83518/1‑150                                                                                                                                                                           CGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCA                                                                  >  2:214609/1‑86                                                                                                                                                                           CGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCA                                                                  <  1:214609/86‑1                                                                                                                                                                           CGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCATAGCACACGCATGAACGAGATCACCAGGTAGAACACGCCTGCGGCGAAGAAGATTTCCACCGGCAGGTAGGTGCG  >  1:465924/1‑150                                                                                                                                                                                                                                                                                                                                  GTGATCTCGTTCATGCTGGTGCAAGGCTTCAAGCTGCTGGAGCGCTGGTTGCGCGTGGATGCCTGCCAAGGCCGCTGAGACCTCACTGACTGCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/337959‑337784 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctgtgggagcgggcgtgcccgcgaagCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGTAGAACACGCCTGCGGCGAAGAAGATTTCCACCGGCAGGTAGGTGCG  >  NC_002947/337868‑338010

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.