| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5690111 = | 21 (0.790) | 8 (0.320) | 6/262 | 2.2 | 28.5% | coding (288/402 nt) | pilG | pilus biosynthesis/twitching motility protein PilG |
| ? | NC_002947 | 5690143 = | 20 (0.790) | coding (256/402 nt) | pilG | pilus biosynthesis/twitching motility protein PilG | |||||
GCCACGCCTGGACGGCTACCAGACCTGCGCGGTAATCAAGCACAACAGTGCCTTCAAGGACACCCCGGTTATCCTGCTGTCGTCCCGCGATGGCCTGTTCGACAAGGCC‑‑CGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5690225‑5690111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgggACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGATGGTC > NC_002947/5690143‑5690263 GCCACGCCTGGACGGCTACCAGACCTGCGCGGTAATCAAGCACAACAGTGCCTTCAAGGACACCCCGGTTATCCTGCTGTCGTCCCGCGATGGCCTGTTCGACAAGGCC‑‑CGC < 1:431799/112‑1GCCACGCCTGGACGGCTACCAGACCTGCGCGGTAATCAAGCACAACAGTGCCTTCAAGGACACCCCGGTTATCCTGCTGTCGTCCCGCGATGGCCTGTTCGACAAGGCC‑‑CGC > 2:431799/1‑112 GGCTACCAGACCTGCGCGGTAATCAAGCACAACAGTGCCTTCAAGGACACCCCGGTTATCCTGCTGTCGTCCCGCGATGGCCTGTTCGACAAGGCC‑‑CGCG > 1:25082/1‑100 GGCTACCAGACCTGCGCGGTAATCAAGCACAACAGTGCCTTCAAGGACACCCCGGTTATCCTGCTGTCGTCCCGCGATGGCCTGTTCGACAAGGCC‑‑CGCG < 2:25082/100‑1 TCCCGCGATGGCCTGTTCGACAAGGCC‑‑CGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGAT > 1:145164/1‑150 CCGCGATGGCCTGTTCGACAAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGACCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCAGCAGCACATCGACTAAAATGATACTGGGATGAT > 2:615833/1‑150 CCGCGATGGCCTGTTCGACAAGGCC‑‑CGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGC > 1:604542/1‑100 CCGCGATGGCCTGTTCGACAAGGCC‑‑CGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGC < 2:604542/100‑1 CCGCGATGGCCTGTTCGACAAGGCC‑‑CGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTT > 1:457934/1‑77 CCGCGATGGCCTGTTCGACAAGGCC‑‑CGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTT < 2:457934/77‑1 GCGATGGCCTGTTCGACAAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGATGG < 1:615833/150‑1 GATGGCCTGTTCGACAAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGCTTGAAGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGATGGTC > 1:111014/1‑150 GCCACGCCTGGACGGCTACCAGACCTGCGCGGTAATCAAGCACAACAGTGCCTTCAAGGACACCCCGGTTATCCTGCTGTCGTCCCGCGATGGCCTGTTCGACAAGGCC‑‑CGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5690225‑5690111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgggACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGATGGTC > NC_002947/5690143‑5690263 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |