New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5690111 =	21 (0.790)	8 (0.320)	6/262	2.2	28.5%	coding (288/402 nt)	pilG	pilus biosynthesis/twitching motility protein PilG
	?	NC_002947	5690143 =	20 (0.790)					coding (256/402 nt)	pilG	pilus biosynthesis/twitching motility protein PilG

CGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCGCCCGCGGGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGATGGTCGACGATCTTGGCCAGGGC  >  NC_002947/5689994‑5690281                                                                                                                                                      |                                                                                                                                           atcagcccagtatcattttcgtcgatgtgctgatgccacgcctggacggctaccagacctgcgcggtaatcaagcacaacagtgccttcaaggacaccccggttatcctgctgtcgtCCCGCGGGCCTTGTCGAACAGGCCATCGCGGga                                                                                                                                            >  1:145164‑M1/118‑150 (MQ=255)  ggTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCGCCCGCGGGCCTTGTCGAACAGGCCATCGCGGgac                                                                                                                                           <  2:159485/150‑1 (MQ=255)           gCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCGCCCGCGGGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAgg                                                                                                                                  <  2:173800/150‑1 (MQ=255)              tgttgtTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGCTCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCGCCCGCGGGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATa                                                                                                                               >  1:309569/1‑150 (MQ=255)                        gTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCGCCCGCGGGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGgtgt                                                                                                                     >  2:637444/1‑150 (MQ=255)                        gTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCGCCCGCGGGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGgtgt                                                                                                                     >  2:382097/1‑150 (MQ=255)                                         acaTGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCGCCCGCGGGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACtgttg                                                                                                    <  1:90936/150‑1 (MQ=255)                                                cgcgGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCGCCCGCGGGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGa                                                                                             <  1:571989/150‑1 (MQ=255)                                                                            gCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCGCCCGCGGGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAg                                                                 <  2:359398/150‑1 (MQ=255)                                                                              tGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCGCCCGCGGGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGc                                                               >  1:422486/1‑150 (MQ=255)                                                                                   ggCTTGGTCAGGAACTGATCGGAACCGACCACCCGCCCGCGGGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTgga                                                          >  1:198948/1‑149 (MQ=255)                                                                                   ggCTTGGTCAGGAACTGATCGGAACCGACCACCCGCCCGCGGGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGc                                                          <  1:88218/150‑1 (MQ=255)                                                                                         gTCAGGAACTGATCGGAACCGACCACCCGCCCGCGGGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGc                                                    <  1:382097/150‑1 (MQ=255)                                                                                         gTCAGGAACTGATCGGAACCGACCACCCGCCCGCGGGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGc                                                    <  1:637444/150‑1 (MQ=255)                                                                                              gAACTGATCGGAACCGACCACCCGCCCGCGGGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATc                                               >  2:20427/1‑150 (MQ=255)                                                                                                         aaCCGACCACCCGCCCGCGGGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGa                                    >  1:263332/1‑150 (MQ=255)                                                                                                                caccCGCCCGCGGGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTggg                             <  1:20427/150‑1 (MQ=255)                                                                                                                     tcccgcgatggcctgttcgacaaggcccgcgggACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGAt                        >  1:145164‑M2/34‑150 (MQ=255)                                                                                                                     ccgcgatggcctgttcgacaaggccatcgcgggACGACAGCAGGATAACCGGGGTGACCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCAGCAGCACATCGACTAAAATGATACTGGgatgat                        >  2:615833‑M2/34‑150 (MQ=255)                                                                                                                       gcgatggcctgttcgacaaggccatcgcgggACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGATgg                      <  1:615833‑M2/119‑1 (MQ=255)                                                                                                                       ccgcgatggcctgttcgacaaggcccgcgggACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCtt                                                                                               <  2:457934‑M2/46‑1 (MQ=255)                                                                                                                       ccgcgatggcctgttcgacaaggcccgcgggACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCtt                                                                                               >  1:457934‑M2/32‑77 (MQ=255)                                                                                                                       ccgcgatggcctgttcgacaaggcccgcgggACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGc                                                                        >  1:604542‑M2/32‑100 (MQ=255)                                                                                                                       ccgcgatggcctgttcgacaaggcccgcgggACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGc                                                                        <  2:604542‑M2/69‑1 (MQ=255)                                                                                                                        CGCGGGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGcc                                                                       >  1:25082‑M1/1‑100 (MQ=255)                                                                                                                        CGCGGGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGcc                                                                       <  2:25082‑M1/100‑1 (MQ=255)                                                                                                                         gatggcctgttcgacaaggccatcgcgggACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGCTTGAAGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGATGGTc                    >  1:111014‑M2/30‑150 (MQ=255)                                                                                                                         GCGGGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGc                                                          >  2:431799‑M1/1‑112 (MQ=255)                                                                                                                         GCGGGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGc                                                          <  1:431799‑M1/112‑1 (MQ=255)                                                                                                                              ccTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAg                                                                                                             <  1:525018/56‑1 (MQ=255)                                                                                                                              ccTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAg                                                                                                             >  2:525018/1‑56 (MQ=255)                                                                                                                                          ggCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGATGGTCGACGATCTTGGCCAggg   <  2:422486/150‑1 (MQ=255)                                                                                                                                           gCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGATGGTCGACGATCTTGGCCAGGGc  >  1:504147/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                           CGGTCAGGGTGCGTGTTGTTGAGGTGCGGCAAACCCGGGCACATGGGCGCGGATCGCGTCGAGCAGTTCTTCCTTGCTGAACGGCTTGGTCAGGAACTGATCGGAACCGACCACCCGCCCGCGGGCCTTGTCGAACAGGCCATCGCGGGACGACAGCAGGATAACCGGGGTGTCCTTGAAGGCACTGTTGTGCTTGATTACCGCGCAGGTCTGGTAGCCGTCCAGGCGTGGCATCAGCACATCGACGAAAATGATACTGGGCTGATGGTCGACGATCTTGGCCAGGGC  >  NC_002947/5689994‑5690281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.