New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 569261837 (1.400)9 (0.370) 6/252 2.2 20.7% intergenic (+31/‑139) PP_4994/PP_4995 hypothetical protein/exopolysaccharide biosynthesis protein
?NC_002947 = 5692680 35 (1.440)intergenic (+93/‑77) PP_4994/PP_4995 hypothetical protein/exopolysaccharide biosynthesis protein

GGCGCAACGCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5692461‑5692618
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggcaTGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCACATGCAGAAAATCAGTTACTGGACAAACGGTCCCCACGGGCAAAGCGCCAGGTGCGGATGATC  <  NC_002947/5692680‑5692536
                                                                                                                                                                                                                                                                                                               
GGCGCAACGCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTT                                                                                                                                                           >  1:609334/1‑150
   GCAACGCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTTTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGC                                                                                                                                                        >  1:284293/1‑150
   GCAACGCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCATCTTCGC                                                                                                                                                        >  1:189352/1‑150
    CAACGCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCG                                                                                                                                                       <  1:97626/150‑1
        GCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCA                                                                                                                                                   >  1:52862/1‑150
                  GCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCGTGCCCGCgaa                                                                                                                                         <  1:447346/150‑4
                                                       GCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCAGCCCCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAAC                                                                                                    >  1:177189/1‑150
                                                                   CGGCTGGATATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGG                                                                                        >  1:254534/1‑150
                                                                   CGGCTGGATATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGG                                                                                        <  2:254534/150‑1
                                                                   CGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGG                                                                                        >  2:299724/1‑150
                                                                   CGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCAGCCCCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGG                                                                                        <  2:177189/150‑1
                                                                     GCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGC                                                                                      <  1:299724/150‑1
                                                                                                          GACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGG                                                                                              >  1:550314/1‑105
                                                                                                          GACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGG                                                                                              <  2:550314/105‑1
                                                                                                                                                    TTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCACATGCAGCAAATCAGTTACTGGACAAACGGTGCGCTCGTGCAAAGGGCCAGGTGCGGA       <  2:427103/150‑1
                                                                                                                                                    TTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCACATGCAGAAAATCAGTTACTGGACAAACGGTCCCCACGGGCAAAGCGCCAGGTGCGGA       <  2:505623/150‑1
                                                                                                                                                    TTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGAGGCC‑GCACATGCAGAAAATCAGTTACTGGACAAACGGTCCCCACGGGCAAAGCGCCAGGTGCGGAT      <  2:449063/150‑1
                                                                                                                                                         GGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCACATGCAGAAAATCAGTTACTGGACAAACGGTCCCCACGGGCAAAGCGCCAGGTGCGGATGATC  <  1:115195/150‑1
                                                                                                                                                                                                                                                                                                               
GGCGCAACGCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5692461‑5692618
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggcaTGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCACATGCAGAAAATCAGTTACTGGACAAACGGTCCCCACGGGCAAAGCGCCAGGTGCGGATGATC  <  NC_002947/5692680‑5692536

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.