New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5692618	37 (1.400)	9 (0.370)	6/252	2.2	20.7%	intergenic (+31/‑139)	PP_4994/PP_4995	hypothetical protein/exopolysaccharide biosynthesis protein
	?	NC_002947	= 5692680	35 (1.440)					intergenic (+93/‑77)	PP_4994/PP_4995	hypothetical protein/exopolysaccharide biosynthesis protein

GCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCT  >  NC_002947/5692469‑5692767                                                                                                                                                      |                                                                                                                                                      gCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCA                                                                                                                                                       >  1:52862‑M1/1‑150 (MQ=255)           gCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCGtgcccgcgaa                                                                                                                                             <  1:447346‑M1/150‑11 (MQ=255)             tGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTACAGTAACTGATTTCCTGCATGAACCAGCCTCTTCGCGGGCACGCCCGCTCCCa                                                                                                                                           >  2:328124/1‑150 (MQ=255)                  gcgcCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGt                                                                                                                                      >  2:500168/1‑150 (MQ=255)                   cgcCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGtt                                                                                                                                     >  1:18568/1‑150 (MQ=255)                     ccGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGAAAGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGc                                                                                                                                   <  1:328124/150‑1 (MQ=255)                             aCCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGgc                                                                                                                           >  1:124857/1‑150 (MQ=255)                               cGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGACCGCTCCCATGGTTTGCTCACCGgcgc                                                                                                                         <  2:189352/150‑1 (MQ=255)                                gTTTACCGGGGATCTAGCCGAGTTCGACCGGATGGAGCTAAACAGCATTCGTAGGTTTGCCCGTGGGGGTTGTTGGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCGCCCACGGGTTGCTCACCGGCGCt                                                                                                                        >  1:112138/1‑150 (MQ=255)                                 tttACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTg                                                                                                                       <  2:128370/150‑1 (MQ=255)                                          gATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCtgtg                                                                                                              <  2:609334/150‑1 (MQ=255)                                            tCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGa                                                                                                            <  2:595750/150‑1 (MQ=255)                                            tCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGa                                                                                                            <  1:343564/150‑1 (MQ=255)                                                gCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCAGCCCCTTCGCGGGCAtgcccgctcccgccgatactccacaggcttcagcgccggtgagcaac                                                                                                        >  1:177189‑M1/1‑103 (MQ=255)                                                           ccGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCg                                                                                             <  2:124857/150‑1 (MQ=255)                                                            cGGCTGGATATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCAtgcccgctcccgccgatactccacaggcttcagcgccggtgagcaacccgtgggagcgg                                                                                            >  1:254534‑M1/1‑91 (MQ=255)                                                            cGGCTGGATATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCAtgcccgctcccgccgatactccacaggcttcagcgccggtgagcaacccgtgggagcgg                                                                                            <  2:254534‑M1/150‑60 (MQ=255)                                                            cGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCAtgcccgctcccgccgatactccacaggcttcagcgccggtgagcaacccgtgggagcgg                                                                                            >  2:299724‑M1/1‑91 (MQ=255)                                                            cGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCAGCCCCTTCGCGGGCAtgcccgctcccgccgatactccacaggcttcagcgccggtgagcaacccgtgggagcgg                                                                                            <  2:177189‑M1/150‑60 (MQ=255)                                                              gCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCAtgcccgctcccgccgatactccacaggcttcagcgccggtgagcaacccgtgggagcgggc                                                                                          <  1:299724‑M1/150‑62 (MQ=255)                                                                 ggAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCt                                                                                                                 >  1:160783/1‑124 (MQ=255)                                                                 ggAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCt                                                                                                                 <  2:160783/124‑1 (MQ=255)                                                                    gaTCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCAtgccc                                                                                    <  1:115195‑M2/150‑6 (MQ=255)                                                                        atcCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGC‑GGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCAtgcccgcgaa                                                                               <  2:449063‑M2/150‑11 (MQ=255)                                                                         tcCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCAtgcccgcgaa                                                                               <  2:505623‑M2/150‑11 (MQ=255)                                                                         tcCGCACCTGGCCCTTTGCACGAGCGCACCGTTTGTCCAGTAACTGATTTGCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCAtgcccgcgaa                                                                               <  2:427103‑M2/150‑11 (MQ=255)                                                                            gCACCTGGCGATTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAggg                                                                            <  1:474789/150‑1 (MQ=255)                                                                                cTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTg                                                                        <  2:18568/150‑1 (MQ=255)                                                                                       tttGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAg                                                                 >  1:173560/1‑150 (MQ=255)                                                                                         tGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTG‑CGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGa                                                              <  1:449063/150‑1 (MQ=255)                                                                                            ccGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGaca                                                            >  1:288662/1‑150 (MQ=255)                                                                                                 gggACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAg                                                       <  1:500168/150‑1 (MQ=255)                                                                                                   gACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCAtgcccgctcccgccgatactccacaggcttcagcgccggtgagcaacccgtgg                                                                                                  <  2:550314‑M1/105‑54 (MQ=255)                                                                                                   gACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCAtgcccgctcccgccgatactccacaggcttcagcgccggtgagcaacccgtgg                                                                                                  >  1:550314‑M1/1‑52 (MQ=255)                                                                                                    aCCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGccc                                                    <  2:52862/150‑1 (MQ=255)                                                                                                       gTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCAcc                                                 >  1:174096/1‑150 (MQ=255)                                                                                                           gTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGt                                             <  2:115195/150‑1 (MQ=255)                                                                                                               aGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGt                                         >  1:476497/1‑150 (MQ=255)                                                                                                                  aaCTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGtctc                                      <  2:174096/150‑1 (MQ=255)                                                                                                                    cTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTCATGTCTTTTGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCAGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGc                                    <  1:51555/150‑1 (MQ=39)                                                                                                                     tGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGCTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAACAGCGACACAAAGCCCACCTTGTCAGTCTCGcc                                   >  1:369528/1‑150 (MQ=255)                                                                                                                         tttCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCt                               <  2:284293/150‑1 (MQ=255)                                                                                                                            cTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGgc                            <  1:505623/150‑1 (MQ=255)                                                                                                                                       ggCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATc                 <  2:173560/150‑1 (MQ=255)                                                                                                                                        gCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAggg                                                                            >  2:400597/1‑90 (MQ=255)                                                                                                                                        gCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAggg                                                                            <  1:400597/90‑1 (MQ=255)                                                                                                                                            ctTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCa            <  2:476497/150‑1 (MQ=255)                                                                                                                                             ttCGCGGGCAtgcccgctcccgccgatactccacaggcttcagcgccggtgagcaacccgtgggagcgggcgtgcccgcgaagaggccggcacatgcagcaaatcagttactggacaaacggtgcgctcgtgcaaagggccaggtgcgga           <  2:427103‑M1/150‑141 (MQ=255)                                                                                                                                             ttCGCGGGCAtgcccgctcccgccgatactccacaggcttcagcgccggtgagcaacccgtgggagcgggcgtgcccgcgaagaggccggcacatgcagaaaatcagttactggacaaacggtccccacgggcaaagcgccaggtgcgga           <  2:505623‑M1/150‑141 (MQ=255)                                                                                                                                             ttCGCGGGCAtgcccgctcccgccgatactccacaggcttcagcgccggtgagcaacccgtgggagcgggcgtgcccgcgaagaggccgcacatgcagaaaatcagttactggacaaacggtccccacgggcaaagcgccaggtgcggat           <  2:449063‑M1/150‑141 (MQ=255)                                                                                                                                             ttCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCAc                                                  <  1:182581/111‑1 (MQ=255)                                                                                                                                             ttCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCAc                                                  >  2:182581/1‑111 (MQ=255)                                                                                                                                             ttCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCAt           >  1:211420/1‑150 (MQ=255)                                                                                                                                                  gggCAtgcccgctcccgccgatactccacaggcttcagcgccggtgagcaacccgtgggagcgggcgtgcccgcgaagaggccggcacatgcagaaaatcagttactggacaaacggtccccacgggcaaagcgccaggtgcggatgatc      <  1:115195‑M1/150‑146 (MQ=255)                                                                                                                                                      aCGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCt  <  1:427103/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                      GCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCT  >  NC_002947/5692469‑5692767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.