New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5692618	37 (1.400)	9 (0.370)	6/252	2.2	20.7%	intergenic (+31/‑139)	PP_4994/PP_4995	hypothetical protein/exopolysaccharide biosynthesis protein
	?	NC_002947	= 5692680	35 (1.440)					intergenic (+93/‑77)	PP_4994/PP_4995	hypothetical protein/exopolysaccharide biosynthesis protein

GATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGA  >  NC_002947/5692536‑5692821                                                                                                                                                 |                                                                                                                                              gaTCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCAtgccc                                                                                                                                          <  1:115195‑M2/150‑6 (MQ=255)     atcCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGC‑GGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCAtgcccgcgaa                                                                                                                                     <  2:449063‑M2/150‑11 (MQ=255)      tcCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCAtgcccgcgaa                                                                                                                                     <  2:505623‑M2/150‑11 (MQ=255)      tcCGCACCTGGCCCTTTGCACGAGCGCACCGTTTGTCCAGTAACTGATTTGCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCAtgcccgcgaa                                                                                                                                     <  2:427103‑M2/150‑11 (MQ=255)         gCACCTGGCGATTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAggg                                                                                                                                  <  1:474789/150‑1 (MQ=255)             cTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTg                                                                                                                              <  2:18568/150‑1 (MQ=255)                    tttGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAg                                                                                                                       >  1:173560/1‑150 (MQ=255)                      tGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTG‑CGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGa                                                                                                                    <  1:449063/150‑1 (MQ=255)                         ccGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGaca                                                                                                                  >  1:288662/1‑150 (MQ=255)                              gggACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAg                                                                                                             <  1:500168/150‑1 (MQ=255)                                 aCCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGccc                                                                                                          <  2:52862/150‑1 (MQ=255)                                    gTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCAcc                                                                                                       >  1:174096/1‑150 (MQ=255)                                        gTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGt                                                                                                   <  2:115195/150‑1 (MQ=255)                                            aGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGt                                                                                               >  1:476497/1‑150 (MQ=255)                                               aaCTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGtctc                                                                                            <  2:174096/150‑1 (MQ=255)                                                 cTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTCATGTCTTTTGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCAGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGc                                                                                          <  1:51555/150‑1 (MQ=39)                                                  tGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGCTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAACAGCGACACAAAGCCCACCTTGTCAGTCTCGcc                                                                                         >  1:369528/1‑150 (MQ=255)                                                      tttCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCt                                                                                     <  2:284293/150‑1 (MQ=255)                                                         cTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGgc                                                                                  <  1:505623/150‑1 (MQ=255)                                                                    ggCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATc                                                                       <  2:173560/150‑1 (MQ=255)                                                                     gCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAggg                                                                                                                                  <  1:400597/90‑1 (MQ=255)                                                                     gCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAggg                                                                                                                                  >  2:400597/1‑90 (MQ=255)                                                                         ctTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCa                                                                  <  2:476497/150‑1 (MQ=255)                                                                          ttCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCAc                                                                                                        >  2:182581/1‑111 (MQ=255)                                                                          ttCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCAc                                                                                                        <  1:182581/111‑1 (MQ=255)                                                                          ttCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCAt                                                                 >  1:211420/1‑150 (MQ=255)                                                                                   gtgCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCt                                                        >  1:346555/3‑150 (MQ=255)                                                                                   aCGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCt                                                        <  1:427103/150‑1 (MQ=255)                                                                                     gCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCAtgcccgcgaagaggccggcacatgcagaaaatcagttactggacaaacggtccccacgggcaaagcgccaggtgcggatgatctccagc                                                      <  1:299724‑M2/150‑90 (MQ=255)                                                                                       ccGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCAtgcccgcgaaggggctggcacatgcagaaaatcagttactggacaaacggtccccacgggcaaagcgccaggtgcggatgatctccagccg                                                    <  2:177189‑M2/150‑92 (MQ=255)                                                                                       ccGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCAtgcccgcgaagaggccggcacatgcagaaaatcagttactggacaaacggtccccacgggcaaagcgccaggtgcggatgatctccagccg                                                    >  2:299724‑M2/1‑59 (MQ=255)                                                                                       ccGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCAtgcccgcgaagaggccggcacatgcagaaaatcagttactggacaaacggtccccacgggcaaagcgccaggtgcggatgatatccagccg                                                    >  1:254534‑M2/1‑59 (MQ=255)                                                                                       ccGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCAtgcccgcgaagaggccggcacatgcagaaaatcagttactggacaaacggtccccacgggcaaagcgccaggtgcggatgatatccagccg                                                    <  2:254534‑M2/150‑92 (MQ=255)                                                                                             ccACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCAtgcccgcgaagaggccggcacatgcagaaaatcagttactggacaaacggtc                                                                                           <  2:550314‑M2/105‑53 (MQ=255)                                                                                             ccACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCAtgcccgcgaagaggccggcacatgcagaaaatcagttactggacaaacggtc                                                                                           >  1:550314‑M2/1‑53 (MQ=255)                                                                                                   gTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCAtgcccgcgaaggggctggcacatgcagaaaatcagttactggacaaacggtccccacgggcaaagcgccaggtgcggatgatctccagccggtcgaactcggc                                        >  1:177189‑M2/1‑47 (MQ=255)                                                                                                      gCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAg                                     <  2:346555/150‑1 (MQ=255)                                                                                                        tCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCacac                                                                           <  1:484788/110‑1 (MQ=255)                                                                                                        tCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCacac                                                                           >  2:484788/1‑110 (MQ=255)                                                                                                                gcTCAAGCCGGTGGAGGATCGGCGGCAGTGGGCATCCCCACGAAGGGCATGGCAAAAGCGACACACAGCACACCTTGTCAGTCTCGCCACCTGCCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTcc                           <  2:112138/150‑1 (MQ=255)                                                                                                                   gAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGCCAGTCTCGCCACCTGGCGCCACACTACCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTgc                        <  2:399005/150‑2 (MQ=255)                                                                                                                               gcaTCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGc            >  2:176746/3‑150 (MQ=255)                                                                                                                               gTATCGTCGGGAGCGGGCAAACGCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCGTGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGc            <  2:369528/150‑1 (MQ=255)                                                                                                                                     gtgggAGCGGGCGTGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTc                                                       >  2:209447/3‑101 (MQ=255)                                                                                                                                     gtgggAGCGGGCGTGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTc                                                       <  1:209447/99‑1 (MQ=255)                                                                                                                                     cccttcgCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATgg      >  2:437549/7‑150 (MQ=255)                                                                                                                                        ttcgcggGCAcgcccgcgaagaggccggcacatgcagaaaatcagttactggacaaacggtccccacgggcaaagcgccaggtgcggatgatctccagccggtcgaactcggctagatccccggtaaacggtgcaaacggcgcggccagc   <  1:447346‑M2/147‑141 (MQ=255)                                                                                                                                         gAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGa  >  1:86521/1‑150 (MQ=255)                                                                                                                                                 |                                                                                                                                              GATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGA  >  NC_002947/5692536‑5692821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.