New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6045763 =	25 (0.950)	8 (0.310)	7/264	2.0	25.0%	coding (404/768 nt)	PP_5298	glutamine amidotransferase
	?	NC_002947	6045795 =	24 (0.940)					coding (372/768 nt)	PP_5298	glutamine amidotransferase

CCCGGCATGATCTGGCGCGTGATCGCCTGACCCTGCCGCTGTTGCAGGCAGCCATTGCCGTCGGTGTGCCCGTATTCTGCATCTGCCGAGGCTACCAGGAGCTGAACGTGGCCCTTGGCGGCAG‑‑CCTGCACCAGCGTGTGCAGGAACTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6045913‑6045763 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAGGCGATCACGCGCCAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCA  >  NC_002947/6045795‑6045936                                                                                                                                                                                                                                                                                                         CCCGGCATGATCTGGCGCGTAATCGCCTGACCCTGCCGCTGTTGCAGGCAGCCATTGCCGTCGGTGTGCCCGTATTCTGCATCTGCCGAGGCTACCAGGAGCTGAACGTGGCCCTTGGCGGCAG‑‑CCTGCACCACCGTGTGCAGGAACTGC                                                                                                                                                 >  2:113823/1‑150         GATCTGGCGCGTGATCGCCTGACCCTGCCGCTGTTGCAGGCAGCCATTGCCGTCGGTGTGCCCGTATTCTGCATCTGCCGAGGCTACCAGGAGCTGAACGTGGCCCTTGGCGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGG                                                                                                                                         <  1:613725/150‑1                                                                                                                  CTTGGCGGCAG‑‑CCTGCACCAGCGTGTGCAGGAACTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAA                                                                  >  1:49687/1‑116                                                                                                                  CTTGGCGGCAG‑‑CCTGCACCAGCGTGTGCAGGAACTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAA                                                                  <  2:49687/116‑1                                                                                                                           AG‑‑CCTGCACCAGCGTGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACG                                                                                   <  1:14595/88‑1                                                                                                                           AG‑‑CCTGCACCAGCGTGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACG                                                                                   >  2:14595/1‑88                                                                                                                               CCTGCACCAGCGTGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAGGCGATCACGCGCCAGATCATGCCGGGTACCCG                   >  1:228402/1‑150                                                                                                                               CCTGCACCAGCGTGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAGGCGATCACGCGCCAGATCATGCCGGGTACCCG                   >  2:605141/1‑150                                                                                                                                                  GAACTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAGGCGATCACGCGCCAGATCATGCCGGTTACCCGCCACACTGGGGGCGCCA  <  2:613725/150‑1                                                                                                                                                                                                                                                                                                         CCCGGCATGATCTGGCGCGTGATCGCCTGACCCTGCCGCTGTTGCAGGCAGCCATTGCCGTCGGTGTGCCCGTATTCTGCATCTGCCGAGGCTACCAGGAGCTGAACGTGGCCCTTGGCGGCAG‑‑CCTGCACCAGCGTGTGCAGGAACTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6045913‑6045763 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAGGCGATCACGCGCCAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCA  >  NC_002947/6045795‑6045936

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.