New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6045763 =	25 (0.950)	8 (0.310)	7/264	2.0	25.0%	coding (404/768 nt)	PP_5298	glutamine amidotransferase
	?	NC_002947	6045795 =	24 (0.940)					coding (372/768 nt)	PP_5298	glutamine amidotransferase

TGCGCCACCAACCCCAGGCGCTCGAACAACCCGCCAGGCTCGATGCTGACCGAGTGGCGAGGGCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAGGCGATCACGCGCCAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCA  >  NC_002947/6045646‑6045936                                                                                                                                                        |                                                                                                                                              tGCGCCACCAACCCCAGGCGCTCGAACAACCCGCCAGGCTCGATGCTGACCGAGTGGCGAGGGCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTgccg                                                                                                                                               <  1:298483/150‑1 (MQ=255)     ccaccaACCCCAGGCGCTCGAACAACCCGCCAGGCTCGATGCTGACCGAGTGGCGAGGGCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCaa                                                                                                                                           >  2:584629/1‑150 (MQ=255)       cccaACCCCAGGCGCTCGAACAACCCGCCAGGCTCGATGCTGACCGAGTGGCGAGGGCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCaatg                                                                                                                                         <  1:555463/149‑3 (MQ=255)         gatctggcgcgtgatcgcctgaccctgccgctgttgcaggcagccattgccgtcggtgtgcccgtattctgcatctgccgaggctaccaggagctgaacgtggcccttggcggcagttcctgcacacgctggtgcaggctgccGCCAAgg                                                                                                                                         <  1:613725‑M2/7‑1 (MQ=255)                          acaacCCGCCAGGCTCGATGCTGACCGAGTGGCGAGGGCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGt                                                                                                                      >  2:531671/1‑150 (MQ=255)                                        ttgcaggcagccattgccgtcggtgtgcccgtattctgcatctgccgaggctaccaggagctgaacgtggcccttggcGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAg                                                                                                                                          <  2:49687‑M1/38‑1 (MQ=255)                                        ttgcaggcagccattgccgtcggtgtgcccgtattctgcatctgccgaggctaccaggagctgaacgtggcccttggcGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAg                                                                                                                                          >  1:49687‑M1/79‑116 (MQ=255)                                                 aCCGAGTGGCGAGGGCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACg                                                                                               >  1:62200/1‑150 (MQ=255)                                                   cGAGTGGCGAGGGCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACggg                                                                                             <  1:148831/150‑1 (MQ=255)                                                   cGAGTGGCGAGGGCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACggg                                                                                             <  2:363913/150‑1 (MQ=255)                                                   cGAGTGGCGAGGACCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACggg                                                                                             <  1:537671/150‑1 (MQ=255)                                                              ggCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACgg                                                                                  >  2:447926/1‑150 (MQ=255)                                                              ggCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACgg                                                                                  <  2:62200/150‑1 (MQ=255)                                                                  gTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAAt                                                                              <  1:3025/150‑1 (MQ=255)                                                                           cTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTgg                                                                                                                       >  1:139504/1‑100 (MQ=255)                                                                           cTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTgg                                                                                                                       <  2:139504/100‑1 (MQ=255)                                                                           cTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGGAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGctgcctg                                                                     >  1:520149/1‑150 (MQ=255)                                                                            tCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGctgcctgc                                                                    >  1:65907/1‑150 (MQ=255)                                                                               aGGGGGGCGTCCTCAGGTTCGCGGGGGTCAATGTAGCCATGCAGTTCCTGCACAAGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAAc                                                                 >  1:177377/1‑150 (MQ=255)                                                                                        tCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAACAGCGGCAgg                                                        <  1:447926/150‑1 (MQ=255)                                                                                                          tCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAGGCGATCACGCGcc                                      <  1:531671/150‑1 (MQ=255)                                                                                                               ccttggcGGCAG‑‑CCTGCACCAGCGTGTGCAGGAACTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAGGCGATCACGCGCCAGATc                                 <  1:613725‑M1/143‑1 (MQ=255)                                                                                                                  cttggcggcagcctgcaccagcgtgtgcaggaactgccGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCaa                                                                  >  1:49687‑M2/39‑116 (MQ=255)                                                                                                                  cttggcggcagcctgcaccagcgtgtgcaggaactgccGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCaa                                                                  <  2:49687‑M2/78‑1 (MQ=255)                                                                                                                       GCAGTTCCTGCACACGGTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAGGCGATTACGCGCCAGATCATGCCggg                         >  2:113823‑M1/1‑150 (MQ=255)                                                                                                                            tCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAGGCGATCACGCGCCAGATCATGCCGGGTAccc                    <  1:407354/150‑1 (MQ=255)                                                                                                                             agcctgcaccagcgtgtgcaggctgccGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACg                                                                                   <  1:14595‑M2/61‑1 (MQ=255)                                                                                                                             agcctgcaccagcgtgtgcaggctgccGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACg                                                                                   >  2:14595‑M2/28‑88 (MQ=255)                                                                                                                              cTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAGGCGATCACGCGCCAGATCATGCCGGGTACCCGc                  >  1:441474/1‑150 (MQ=255)                                                                                                                               cctgcaccagcgtgtgcaggctgccGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAGGCGATCACGCGCCAGATCATGCCGGGTACCCg                   >  2:605141‑M2/26‑150 (MQ=255)                                                                                                                               cctgcaccagcgtgtgcaggctgccGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAGGCGATCACGCGCCAGATCATGCCGGGTACCCg                   >  1:228402‑M2/26‑150 (MQ=255)                                                                                                                                gCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAGGCGATCACGCGCCAGATCATGCCGGGTACCCGCca                >  1:285134/1‑150 (MQ=255)                                                                                                                                         ggTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAGGCGATCACGCGCCAGATCATGCCGGGTACCCGCCACACTggggg       <  2:441474/150‑1 (MQ=255)                                                                                                                                          gTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAg                                                   >  1:637507/1‑105 (MQ=255)                                                                                                                                          gTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAg                                                   <  2:637507/105‑1 (MQ=255)                                                                                                                                                gaactgccGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAGGCGATCACGCGCCAGATCATGCCGGTTACCCGCCACACTGGGGGCGCCa  <  2:613725‑M2/142‑1 (MQ=255)                                                                                                                                                        |                                                                                                                                              TGCGCCACCAACCCCAGGCGCTCGAACAACCCGCCAGGCTCGATGCTGACCGAGTGGCGAGGGCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAGGCGATCACGCGCCAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCA  >  NC_002947/6045646‑6045936

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.