New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6045763 =	25 (0.950)	8 (0.310)	7/264	2.0	25.0%	coding (404/768 nt)	PP_5298	glutamine amidotransferase
	?	NC_002947	6045795 =	24 (0.940)					coding (372/768 nt)	PP_5298	glutamine amidotransferase

CTGGCTGTGCAGCGAATTGACCTCGAACTGCGCCACCAACCCCAGGCGCTCGAACAACCCGCCAGGCTCGATGCTGACCGAGTGGCGAGGGCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAGGCGATCACGCGCCAGATC  >  NC_002947/6045618‑6045905                                                                                                                                                  |                                                                                                                                                 cTGGCTGTGCAGCGAATTGACCTCGAACTGCGCCACCAACCCCAGGCGCTCGAACAACCCGCCAGGCTCGATGCTGACCGAGTGGCGAGGGCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAg                                                                                                                                              >  2:3025/1‑150 (MQ=255)    tggcgcccccagtgtggcgggtaaccggcatgatctggcgcgtgatcgcctgaccctgccgctgttgcaggcagccattgccgtcggtgtgcccgtattctgcatctgccgaggctaccaggagctgaacgtggcccttggcGGCAGTTc                                                                                                                                           <  2:613725‑M1/8‑1 (MQ=255)      tgtgCAGCGAATTGACCTCGAACTGCGCCACCAACCCCAGGCGCTCGAACAACCCGCCAGGCTCGATGCTGACCGAGTGGCGAGGGCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCt                                                                                                                                         <  1:94982/150‑1 (MQ=255)                     cgggtacccggcatgatctggcgcgtgatcgcctgaccctgccgctgttgcaggcagccattgccgtcggtgtgcccgtattctgcatctgccgaggctaccaggagctgaacgtggcccttggcGGCAG‑‑CCTGCACACGCTGGTGCAgg                                                                                                                        >  2:605141‑M1/126‑150 (MQ=255)                     cgggtacccggcatgatctggcgcgtgatcgcctgaccctgccgctgttgcaggcagccattgccgtcggtgtgcccgtattctgcatctgccgaggctaccaggagctgaacgtggcccttggcGGCAG‑‑CCTGCACACGCTGGTGCAgg                                                                                                                        >  1:228402‑M1/126‑150 (MQ=255)                      cTCGAACTGCGCCACCAACCCCAGGCGCTCGAACAACCCTCCAGGCTCGATGCTGACCGAGTGGCGAGGGCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAg                                                                                                                         >  1:435073/1‑150 (MQ=255)                      cTCGAACTGCGCCACCAACCCCAGGCGCTCGAACAACCCGCCAGGCTCGATGCTGACCGAGTGGCGAGGGCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGca                                                                                                                                      <  1:82137/137‑1 (MQ=255)                      cTCGAACTGCGCCACCAACCCCAGGCGCTCGAACAACCCGCCAGGCTCGATGCTGACCGAGTGGCGAGGGCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGca                                                                                                                                      >  2:82137/1‑137 (MQ=255)                             tGCGCCACCAACCCCAGGCGCTCGAACAACCCGCCAGGCTCGATGCTGACCGAGTGGCGAGGGCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTgccg                                                                                                                <  1:298483/150‑1 (MQ=255)                                gcCACCAACCCCAGGCGCTCGAACAACCCGCCAGGCTCGATGCTGACCGAGTGGCGAGGGCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCa                                                                                                                          >  1:321897/1‑139 (MQ=255)                                gcCACCAACCCCAGGCGCTCGAACAACCCGCCAGGCTCGATGCTGACCGAGTGGCGAGGGCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCa                                                                                                                          <  2:321897/139‑1 (MQ=255)                                 ccaccaACCCCAGGCGCTCGAACAACCCGCCAGGCTCGATGCTGACCGAGTGGCGAGGGCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCaa                                                                                                            >  2:584629/1‑150 (MQ=255)                                   cccaACCCCAGGCGCTCGAACAACCCGCCAGGCTCGATGCTGACCGAGTGGCGAGGGCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCaatg                                                                                                          <  1:555463/149‑3 (MQ=255)                                                      acaacCCGCCAGGCTCGATGCTGACCGAGTGGCGAGGGCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGt                                                                                       >  2:531671/1‑150 (MQ=255)                                                                    ttgcaggcagccattgccgtcggtgtgcccgtattctgcatctgccgaggctaccaggagctgaacgtggcccttggcGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAg                                                                                                           >  1:49687‑M1/79‑116 (MQ=255)                                                                    ttgcaggcagccattgccgtcggtgtgcccgtattctgcatctgccgaggctaccaggagctgaacgtggcccttggcGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAg                                                                                                           <  2:49687‑M1/38‑1 (MQ=255)                                                                             aCCGAGTGGCGAGGGCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACg                                                                >  1:62200/1‑150 (MQ=255)                                                                               cGAGTGGCGAGGGCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACggg                                                              <  2:363913/150‑1 (MQ=255)                                                                               cGAGTGGCGAGGGCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACggg                                                              <  1:148831/150‑1 (MQ=255)                                                                               cGAGTGGCGAGGACCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACggg                                                              <  1:537671/150‑1 (MQ=255)                                                                                     cgtcggtgtgcccgtattctgcatctgccgaggctaccaggagctgaacgtggcccttggcGGCAG‑‑CCTGCACACGCTGGTGCAGG‑‑Ct                                                                                                                    >  2:14595‑M1/62‑88 (MQ=255)                                                                                     cgtcggtgtgcccgtattctgcatctgccgaggctaccaggagctgaacgtggcccttggcGGCAG‑‑CCTGCACACGCTGGTGCAGG‑‑Ct                                                                                                                    <  1:14595‑M1/27‑1 (MQ=255)                                                                                          ggCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACgg                                                   >  2:447926/1‑150 (MQ=255)                                                                                          ggCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACgg                                                   <  2:62200/150‑1 (MQ=255)                                                                                              gTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAAt                                               <  1:3025/150‑1 (MQ=255)                                                                                                       cTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTgg                                                                                        >  1:139504/1‑100 (MQ=255)                                                                                                       cTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTgg                                                                                        <  2:139504/100‑1 (MQ=255)                                                                                                       cTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGGAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGctgcctg                                      >  1:520149/1‑150 (MQ=255)                                                                                                        tCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGctgcctgc                                     >  1:65907/1‑150 (MQ=255)                                                                                                           aGGGGGGCGTCCTCAGGTTCGCGGGGGTCAATGTAGCCATGCAGTTCCTGCACAAGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAAc                                  >  1:177377/1‑150 (MQ=255)                                                                                                                    tCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAACAGCGGCAgg                         <  1:447926/150‑1 (MQ=255)                                                                                                                                      tCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAGGCGATCACGCGcc       <  1:531671/150‑1 (MQ=255)                                                                                                                                           ccttggcGGCAG‑‑CCTGCACCAGCGTGTGCAGGAACTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAGGCGATCACGCGCCAGATc  <  1:613725‑M1/143‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                 CTGGCTGTGCAGCGAATTGACCTCGAACTGCGCCACCAACCCCAGGCGCTCGAACAACCCGCCAGGCTCGATGCTGACCGAGTGGCGAGGGCCGTATTGCACCTCCAGGGGGGCGTCCTCAGGTTCGCGGTGGTCAAGGTAGCCAGGCAGTTCCTGCACACGCTGGTGCAGG‑‑CTGCCGCCAAGGGCCACGTTCAGCTCCTGGTAGCCTCGGCAGATGCAGAATACGGGCACACCGACGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAGGCGATCACGCGCCAGATC  >  NC_002947/6045618‑6045905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.