New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1299238 =	17 (0.640)	4 (0.160)	4/266	2.9	20.8%	coding (946/1608 nt)	PP_1134	hypothetical protein
	?	NC_002947	1299261 =	14 (0.550)					coding (923/1608 nt)	PP_1134	hypothetical protein

GCATGCTGCACGCCAAAGGTGTCTACATGGAAGCCAAACCGTTCTCGGTGGGCTTCCGTATCGAGCACCCGCAAACGCTGATCGACAAGGCACGCCTGGGCAAGTATGCCGGCCACCCAAAACTGGGT‑GCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1299369‑1299238 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgGCATACTTGCCCAGGCGTGCCTTGTCGATCAGCGTTTGCGG  >  NC_002947/1299261‑1299301                                                                                                                                                                                GCATGCTGCACGCCAAAGGTGTCTACATGGAAGCCAAACCGTTCTCGGTGGGCTTCCGTATCGAGCACCCGCAAACGCTGATCGACAAGGCACGCCTGGGCAAGTATGCCGG‑CACCCAGTTTTGGGTGGCCGGCATACTTGCCCAGGCGT                         >  1:290553/1‑150         CACGCCAAAGGTGTCTACATGGAAGCCAAACCGTTCTCGGTGGGCTTCCGTATCGAGCACCCGCAAACGCTGATCGACAAGGCACGCCTGGGCAAGTATGCCGG‑CACCCAGTTTTGGGTGGCCGGCATACTTGCCCAGGCGTGCCTTGTC                 <  2:290553/150‑1                      TCTACATGGAAGCCAAACCGTTCTCGGTGGGCTTCCGTATCGAGCACCCGCAAACGCTGATCGACAAGGCACGCCTGGGCAAGTATGCCGGCCACCCAAAACTGGGT‑GC                                             >  1:435337/1‑109                      TCTACATGGAAGCCAAACCGTTCTCGGTGGGCTTCCGTATCGAGCACCCGCAAACGCTGATCGACAAGGCACGCCTGGGCAAGTATGCCGGCCACCCAAAACTGGGT‑GC                                             <  2:435337/109‑1                                AGCCAAACCGTTCTCGGTGGGCTTCCGTATCGAGCACCCGCAAACGCTGATCGACAAGGCACGCCTGGGCAAGTATGCCGGCCACCCAAAACTGGGT‑Ggc                                            >  1:628741/1‑98                                AGCCAAACCGTTCTCGGTGGGCTTCCGTATCGAGCACCCGCAAACGCTGATCGACAAGGCACGCCTGGGCAAGTATGCCGGCCACCCAAAACTGGGT‑Ggc                                            <  2:628741/100‑3                                                                                                               GGCCACCCAAAACTGGGT‑GCCGGCATACTTGCCCAGGCGTGCCTTGTCGATCAGCGTTTGCGG  >  1:169913/1‑63                                                                                                               GGCCACCCAAAACTGGGT‑GCCGGCATACTTGCCCAGGCGTGCCTTGTCGATCAGCGTTTGCGG  <  2:169913/63‑1                                                                                                                                                                                GCATGCTGCACGCCAAAGGTGTCTACATGGAAGCCAAACCGTTCTCGGTGGGCTTCCGTATCGAGCACCCGCAAACGCTGATCGACAAGGCACGCCTGGGCAAGTATGCCGGCCACCCAAAACTGGGT‑GCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1299369‑1299238 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgGCATACTTGCCCAGGCGTGCCTTGTCGATCAGCGTTTGCGG  >  NC_002947/1299261‑1299301

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.