| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1299238 = | 17 (0.640) | 4 (0.160) | 4/266 | 2.9 | 20.8% | coding (946/1608 nt) | PP_1134 | hypothetical protein |
| ? | NC_002947 | 1299261 = | 14 (0.550) | coding (923/1608 nt) | PP_1134 | hypothetical protein | |||||
GTTGGTGACGACTCGCCCTGGCTCGCTGGTGGCCGCGACCACGGTGCCACCCGGACACATGCAGAAGCTGTATACCGAGCGGCCATTCTTGGCGTGGTAAACCAGCTTGTAGTCGGCGGC‑ACCCAGTTTTGGGTGGCCGGCATACTTGCCCAGGCGTGCCTTGTCGATCAGCGTTTGCGGGTGCTCGATACGGAAGCCCACCGAGAACGGTTTGGCTTCCATGTAGACACCTTTGGCGTGCAGCATGCGGAAGGTGTCGCGGGCGCTGTGGC > NC_002947/1299122‑1299393 | gTTGGTGACGACTCGCCCTGGCTCGCTGGTGGCCGCGACCACGGTGCCACCCGGACACATGCAGAAGCTGTATACCGAGCGGCCATTCTTGGCGTGGTAAACCAGCTTGTAGTCGGCGGC‑ACCCAGTTTTGGGTGGCCGGCATa > 2:401380/1‑144 (MQ=255)gTTGGTGACGACTCGCCCTGGCTCGCTGGTGGCCGCGACCACGGTGCCACCCGGACACATGCAGAAGCTGTATACCGAGCGGCCATTCTTGGCGTGGTAAACCAGCTTGTAGTCGGCGGC‑ACCCAGTTTTGGGTGGCCGGCATa < 1:401380/144‑1 (MQ=255) cgacgagTCGCCCTGGCTCGCTGGTGGCCGCGCCCACGGTGCCACCCGGACACATCCAGAAGCTGTATACCCAGCGGCCATGCTTGGCGTGGTACACCCGCTTGTAGTCGGCGGC‑CCCCAGTTTTGGCTGGACGGCATACTTGCCCAGGc > 2:537007/2‑150 (MQ=255) gcatgctgcacgccaaaggtgtctacatggaagccaaaccgttctcggtgggcttccgtatcgagcacccgcaaacgctgatcgacaaggcacgcctgggcaagtatgccggcacccagttttgggtggccgGCATACTTGCCCAGGCGt > 1:290553‑M2/133‑150 (MQ=255) gacTCGCCCTGGCTCGCTGGTGGCCGCGACCACGGTGCCACCCGGACACATGCAGAAGCTGTATACCGAGCGGCCATTCTTGGCGTGGTAAACCAGCTTGTAGTCGGCGGC‑ACCCAGTTTTGGGTGGCCGGCATACTTGCCCAGGCGTGc > 1:159850/1‑150 (MQ=255) gCCCTGGCTCGCTGGTGGCCGCGACCACGGTGCCACCCGGACACATGCAGAAGCTGTATACCGAGCGGCCATTCTTGGCGTGGTAAACCAGCTTGTAGTCGGCGGC‑ACCCAGTTTTGGGTGGCCGGCATACTTGCCCAg < 1:389905/139‑1 (MQ=255) gCCCTGGCTCGCTGGTGGCCGCGACCACGGTGCCACCCGGACACATGCAGAAGCTGTATACCGAGCGGCCATTCTTGGCGTGGTAAACCAGCTTGTAGTCGGCGGC‑ACCCAGTTTTGGGTGGCCGGCATACTTGCCCAg > 2:389905/1‑139 (MQ=255) cacgccaaaggtgtctacatggaagccaaaccgttctcggtgggcttccgtatcgagcacccgcaaacgctgatcgacaaggcacgcctgggcaagtatgccggcacccagttttgggtggccgGCATACTTGCCCAGGCGTGCCTTGTc < 2:290553‑M2/26‑1 (MQ=255) cTGGCTCGCTGGTGGCCGCGACCACGGTGCCACCCGGACACATGCAGAAGCTGTATACCGAGCGGCCATTCTTGGCGTGGTAAACCAGCTTGTAGTCGGCGGC‑ACCCAGTTTTGGGTGGCCGGCATACTTGCCCAGGCGTGCCTTGTCGa < 2:195515/150‑1 (MQ=255) ggCCGCGACCACGGTGCCACCCGGACACATGCAGAAGCTGTATACCGAGCGGCCATTCTTGGCGTGGTAAACCAGCTTGTAGTCGGCGGC‑ACCCAGTTTTGGGTGGCCGGCATACTTGCCCAGGCGTGCCTTGTCGATCAGCGTTTGCgg < 1:336474/150‑1 (MQ=255) gTGCCACCCGGACACATGCAGAAGCTGTATACCGAGCGGCCATTCTTGGCGTGGTAAACCAGCTTGTAGTCGGCGGC‑ACCCAGTTTTGGGTGGCCGGCATACTTGCCCAGGCGTGCCTTGTCGATCAGCGTTTGCGGGTGCTCGATACgg < 2:547738/150‑1 (MQ=255) cGGACACATGCAGAAGCTGTATACCGAGCGGCCATTCTTGGCGTGGTAAACCAGCTTGTAGTCGGCGGC‑ACCCAGTTTTGGGTGGCCGGCATACTTGCCCAGGCGTGCCTTGTCGATCAGCGTTTGCGGGTGCTCGATACGGAAGCCCAc < 2:204265/150‑1 (MQ=255) aTTCTTGGCGTGGTAAACCAGCTTGTAGTCGGCGGC‑ACCCAGTTTTGGGTGGCCGGCATACTTGCCCAGGCGTGCCTTGTCGATCAGCGTTTGCGGGTGCTCGATACGGAAGCCCACCGAGAACGGTTTGGCTTCCATGTAGACACCttt > 1:491489/1‑150 (MQ=255) gacaaggcacgcctgggcaagtatgcCGGCCACCCAAAACTGGGTG‑CCGGCATACTTGCCCAGGCGTGCCTTGTCGATCAGCGTTTGCGGGTGCTCGATACGGAAGCCCACCGAGAACGGTTTGGCTTCCATGTAGACACCTTTGGCGTg < 2:290553‑M1/124‑1 (MQ=255) acgcctgggcaagtatgcCGGCCACCCAAAACTGGGTG‑CCGGCATACTTGCCCAGGCGTGCCTTGTCGATCAGCGTTTGCGGGTGCTCGATACGGAAGCCCACCGAGAACGGTTTGGCTTCCATGTAGACACCTTTGGCGTGCAGCATGc > 1:290553‑M1/19‑150 (MQ=255) aGCTTGTAGTCGGCGGC‑ACCCAGTTTTGGGTGGCCGGCATACTTGCCCAGGCGTGCCTTGTCGATCAGCGTTTGCGGGTGCTCGATACGGAAGCCCACCGAGAACGGTTTGGCTTCCATGTAGACACCTTTGGCGTGCAGCATGCGGagg < 2:159850/150‑3 (MQ=255) ggcggc‑ACCCAGTTTTGGGTAGCCGGCATACTTGCCCAGGCGTGCCTTGTCGATCAGCGTTTGCGGGTGCTCGATACGGAAGCCCACCGAGAACGGTTTGGCTTCCATGTAGACACCTTTGGCGTGCAGCATGCGGAAGGTGTCGCGGgc > 1:403090/1‑150 (MQ=255) gcC‑ACCCAGTTTTGGGTGGCCGGCATACTTGCCCAGGCGTGCCTTGTCGATCAGCGTTTGCGGGTGCTCGATACGGAAGCCCACCGAGAACGGTTTGGCt < 2:628741‑M1/98‑1 (MQ=255) gcC‑ACCCAGTTTTGGGTGGCCGGCATACTTGCCCAGGCGTGCCTTGTCGATCAGCGTTTGCGGGTGCTCGATACGGAAGCCCACCGAGAACGGTTTGGCt > 1:628741‑M1/3‑100 (MQ=255) ggccacccaaaactgggtgccgGCATACTTGCCCAGGCGTGCCTTGTCGATCAGCGTTTGCgg < 2:169913‑M2/41‑1 (MQ=255) ggccacccaaaactgggtgccgGCATACTTGCCCAGGCGTGCCTTGTCGATCAGCGTTTGCgg > 1:169913‑M2/23‑63 (MQ=255) GC‑ACCCAGTTTTGGGTGGCCGGCATACTTGCCCAGGCGTGCCTTGTCGATCAGCGTTTGCGGGTGCTCGATACGGAAGCCCACCGAGAACGGTTTGGCTTCCATGTAGa < 2:435337‑M1/109‑1 (MQ=255) GC‑ACCCAGTTTTGGGTGGCCGGCATACTTGCCCAGGCGTGCCTTGTCGATCAGCGTTTGCGGGTGCTCGATACGGAAGCCCACCGAGAACGGTTTGGCTTCCATGTAGa > 1:435337‑M1/1‑109 (MQ=255) ccAGTTTTGGGTGGCCGGCATACTTGCCCAGGCATGCCTTGTCGATCAGCGTTTGCGGGTGCTCGATACGGAAGCCCACCGAGAACGGTTTGGCTTCCATGTAGACACCTTTGGCGTGCAGCATGCGGAAGGTGTCGCGGGCGCTGTGGc > 1:309979/1‑150 (MQ=255) | GTTGGTGACGACTCGCCCTGGCTCGCTGGTGGCCGCGACCACGGTGCCACCCGGACACATGCAGAAGCTGTATACCGAGCGGCCATTCTTGGCGTGGTAAACCAGCTTGTAGTCGGCGGC‑ACCCAGTTTTGGGTGGCCGGCATACTTGCCCAGGCGTGCCTTGTCGATCAGCGTTTGCGGGTGCTCGATACGGAAGCCCACCGAGAACGGTTTGGCTTCCATGTAGACACCTTTGGCGTGCAGCATGCGGAAGGTGTCGCGGGCGCTGTGGC > NC_002947/1299122‑1299393 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |