| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2793794 | 9 (0.340) | 7 (0.330) | 6/218 | 1.8 | 49.7% | intergenic (+60/+67) | PP_2445/PP_2446 | membrane protein/hypothetical protein |
| ? | NC_002947 | = 2793804 | 7 (0.330) | intergenic (+70/+57) | PP_2445/PP_2446 | membrane protein/hypothetical protein | |||||
GGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTGGC‑ACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGGTGTGCATG > NC_002947/2793650‑2793941 | ggCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGATGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTtgcca > 2:38161‑M1/1‑145 (MQ=255) aTGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTGGC‑ACTGGc > 2:562866/1‑150 (MQ=255) aTGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTGGC‑ACTGGc < 2:480234/150‑1 (MQ=255) gCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTGGC‑ACTGGCAac > 1:542214‑M2/1‑148 (MQ=255) gCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGATGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTTGCCAGTGCCAcgcgaatacctgt > 1:38161‑M2/1‑137 (MQ=255) gCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTTGC‑CAGTGCCacgcgaatacctgt > 1:536259‑M2/1‑136 (MQ=255) gCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTGGC‑ACTGGCAacgcgaatacctgt > 2:267414‑M2/1‑136 (MQ=255) ccGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTGGC‑ACTGGCAacgcgaatacctgtgcagcgggcttgt > 1:153061‑M2/1‑110 (MQ=255) ccGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTGGC‑ACTGGCAacgcgaatacctgtgcagcgggcttgt < 2:153061‑M2/137‑28 (MQ=255) gAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTtgccagtgccacgcgaat < 2:429108‑M1/87‑19 (MQ=255) gAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTtgccagtgccacgcgaat > 1:429108‑M1/1‑69 (MQ=255) gTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTGGC‑ACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATgc > 2:494031/1‑150 (MQ=255) gggCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTtgccagtgccacgc < 1:455680‑M1/65‑15 (MQ=255) gggCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTtgccagtgccacgc > 2:455680‑M1/1‑51 (MQ=255) gggCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTtgccagtgccacgc < 1:455537‑M1/65‑15 (MQ=255) gggCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTtgccagtgccacgc > 2:455537‑M1/1‑51 (MQ=255) ccTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTGGC‑ACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTg > 1:256038/1‑150 (MQ=255) aCAAGCCCGCTGCACAGGTATTCGCGTtgccagtgccacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttttacatcaaccttcagccgcctcacgcttcaaacgcgctcgacgg > 1:153061‑M1/1‑27 (MQ=255) aCAAGCCCGCTGCACAGGTATTCGCGTtgccagtgccacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttttacatcaaccttcagccgcctcacgcttcaaacgcgctcgacgg < 2:153061‑M1/137‑111 (MQ=255) aaGCCCGCTGCACAGGTATTCGCGTGGC‑ACTGGCAACGCGAATACCTGTCCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGAATGCCTCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCt < 1:562866/150‑1 (MQ=255) cccGCTGCACAGGTATTCGCGTGGC‑ACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCg > 2:379052/1‑150 (MQ=255) cccGCTGCACAGGTATTCGCGTGGC‑ACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCg < 1:494031/150‑1 (MQ=255) acaGGTATTCGCGggcactggcaacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttttacatcaaccttcagccgcctcacgcatcaaacgcgctcgacgggccaggatgttgaggacctcgatagc > 1:38161‑M1/1‑14 (MQ=255) acaGGTATTCGCGTtgccagtgccacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttttacatcaaccttcagccgcctcacgcttcaaacgcgctcgacgggccaggatgttgaggacctcgatagc > 2:267414‑M1/1‑14 (MQ=255) acaGGTATTCGCGTggcactggcaacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttttacatcaaccttcagccgcctcacgcttcaaacgcgctcgacgggccaggatgttgaggacctcgatagc > 1:536259‑M1/1‑14 (MQ=255) aGGTATTCGCGTGGC‑ACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGtt > 2:371407/1‑80 (MQ=255) aGGTATTCGCGTGGC‑ACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGtt < 1:371407/80‑1 (MQ=255) aTTCGCGTGGC‑ACTGGCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttttacatcaaccttc > 1:429108‑M2/1‑18 (MQ=255) aTTCGCGTGGC‑ACTGGCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttttacatcaaccttc < 2:429108‑M2/87‑70 (MQ=255) gcgTGGC‑ACTGGCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgccc > 2:455537‑M2/1‑14 (MQ=255) gcgTGGC‑ACTGGCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgccc > 2:455680‑M2/1‑14 (MQ=255) gcgTGGC‑ACTGGCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgccc < 1:455680‑M2/65‑52 (MQ=255) gcgTGGC‑ACTGGCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgccc < 1:455537‑M2/65‑52 (MQ=255) gTtgccagtgccacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttttacatcaaccttcagccgcctcacgcttcaaacgcgctcgacgggccaggatgttgaggacctcgatagccgtcgagaacgc > 1:542214‑M1/1‑2 (MQ=255) | GGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTGGC‑ACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGGTGTGCATG > NC_002947/2793650‑2793941 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |