New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2793794	9 (0.340)	7 (0.330)	6/218	1.8	49.7%	intergenic (+60/+67)	PP_2445/PP_2446	membrane protein/hypothetical protein
	?	NC_002947	= 2793804	7 (0.330)					intergenic (+70/+57)	PP_2445/PP_2446	membrane protein/hypothetical protein

GCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTGGC‑ACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGGTGTGCATGACGCCGCA  >  NC_002947/2793657‑2793949                                                                                                                                                     |                                                                                                                                                  gCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTGGC‑ACTGGCAac                                                                                                                                                 >  1:542214‑M2/1‑148 (MQ=255)             gCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGATGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTTGCCAGTGCCAcgcgaatacctgt                                                                                                                                      >  1:38161‑M2/1‑137 (MQ=255)             gCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTTGC‑CAGTGCCacgcgaatacctgt                                                                                                                                     >  1:536259‑M2/1‑136 (MQ=255)             gCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTGGC‑ACTGGCAacgcgaatacctgt                                                                                                                                     >  2:267414‑M2/1‑136 (MQ=255)                                       ccGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTGGC‑ACTGGCAacgcgaatacctgtgcagcgggcttgt                                                                                                                        >  1:153061‑M2/1‑110 (MQ=255)                                       ccGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTGGC‑ACTGGCAacgcgaatacctgtgcagcgggcttgt                                                                                                                        <  2:153061‑M2/137‑28 (MQ=255)                                                                          gTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTGGC‑ACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATgc                                                                        >  2:494031/1‑150 (MQ=255)                                                                                             ccTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTGGC‑ACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTg                                                     >  1:256038/1‑150 (MQ=255)                                                                                                                  aaGCCCGCTGCACAGGTATTCGCGTGGC‑ACTGGCAACGCGAATACCTGTCCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGAATGCCTCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCt                                <  1:562866/150‑1 (MQ=255)                                                                                                                     cccGCTGCACAGGTATTCGCGTGGC‑ACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCg                             <  1:494031/150‑1 (MQ=255)                                                                                                                     cccGCTGCACAGGTATTCGCGTGGC‑ACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCg                             >  2:379052/1‑150 (MQ=255)                                                                                                                               aGGTATTCGCGTGGC‑ACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGtt                                                                                         >  2:371407/1‑80 (MQ=255)                                                                                                                               aGGTATTCGCGTGGC‑ACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGtt                                                                                         <  1:371407/80‑1 (MQ=255)                                                                                                                                   aTTCGCGTGGC‑ACTGGCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttttacatcaaccttc                                                                              >  1:429108‑M2/1‑18 (MQ=255)                                                                                                                                   aTTCGCGTGGC‑ACTGGCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttttacatcaaccttc                                                                              <  2:429108‑M2/87‑70 (MQ=255)                                                                                                                                       gcgTGGC‑ACTGGCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgccc                                                                                                <  1:455680‑M2/65‑52 (MQ=255)                                                                                                                                       gcgTGGC‑ACTGGCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgccc                                                                                                <  1:455537‑M2/65‑52 (MQ=255)                                                                                                                                       gcgTGGC‑ACTGGCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgccc                                                                                                >  2:455537‑M2/1‑14 (MQ=255)                                                                                                                                       gcgTGGC‑ACTGGCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgccc                                                                                                >  2:455680‑M2/1‑14 (MQ=255)                                                                                                                                                 tGGCAacgcgaatacctgtgcagcgggcttgtccgcaagaggggcgcgaggcgcccctttttacatcaaccttcagccgcctcacgcatcaaacgcgctcgacgggccaggatgttgaggacctcgatagccgtcgagaacgccatggcc  >  2:38161‑M2/1‑5 (MQ=255)                                                                                                                                                     |                                                                                                                                                  GCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCGTGGC‑ACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGGTGTGCATGACGCCGCA  >  NC_002947/2793657‑2793949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.