New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	618970 =	100 (1.130)	6 (0.070)	6/234	NT	5.9%	coding (1031/1329 nt)	pfeS‑I	histidine kinase
	?	NC_002947	619007 =	98 (1.160)					coding (994/1329 nt)	pfeS‑I	histidine kinase

CCCAGCCTGGTGACCGAGCCGGTATTGGTGCTTTCCGTGTGGGAAGCCTTGTGCGAGGACGTCTGTTTCGAAAGCGGCTGGGACCGTGCGCGCCTGCCGTGCTCACTTGGCACCGACTGCCTGGTGCAGGCCCATCTGGACAGCCTGGCCCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/619124‑618970 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggcAGTCGGTGCCAAGTGAGCACGGCAGGCGCGCACGGTCCCAGCCGCTTTCGAAACAGACGTCCTCGCACAAGGCTTCCCACACGGAAAGCACCAATACCGGCTCGGTCACCAGGCTGGGCTGTTCGGTGTCCATCCAGGCCAGGTCGA  >  NC_002947/619007‑619153                                                                                                                                                                                                                                                                                                                CCCAGCCTGGTGACCGAGCCGGTATTGGTGCTTTCCGTGTGGGAAGCCTTGTGCGAGGACGTCTGTTTCGAAAGCGGCTGGGACCGTGCGCGCCTGCCGTGCTCACTTGGCACCGACTGCCTGGTGCAGGCCCATCTGGACAGCCTGGCC                                                                                                                                                          >  2:391757/1‑150   CAGCCTGGTGACCGCGCAGGTATTGTGGCTTTCCGTGTGGGAAGCCTTGTGCGAGGACGTCTGTTTCGAAAGCGGCTGGGACCGTGCGCGCCTGCCGTGCTCACTTGGCACCGACTGCCTGGTGCAGGCCCATCTGGACAGCCTGGCCCA                                                                                                                                                        <  2:1159653/150‑1   CAGCCTGGTGACCGAGCCGGTATTGGTGCTTTCCGTGTGGGAAGCCTTGTGCGAGGACGTCTGTTTCGAAAGCGGCTGGGACCGTGCGCGCCTGCCGTGCTCACTTGGCACCGACTGCCTGGTGCAGGCCCATCTGGACAGCCTGGCCCA                                                                                                                                                        <  1:322888/150‑1    AGCCTGGTGACCGAGCCGGTATTGGTGCTTTCCGTGTGGGAAGCCTTGTGCGAGGTCGTGTGTCTGGAAAGCGGGTGGGCCCGTGCGCGCCTGCCGTGCTCACTTGGCACCGACTGCCTGGTGCAGGCCCATCTGGACAGCCTGGCCCAG                                                                                                                                                       <  1:549823/150‑1    AGCCTGGTGACCGAGCCGGTATTGGTGCTTTCCGTGTGGGAAGCCTTGTGCGAGGACGTCTGTTTCGAAAGCGGCTGGGACCGTGCGCGCCTGCCGTGCTCACTTGGCACCGACTGCCTGGTGCAGGCCCATCTGGACAGCCTGGCCCAG                                                                                                                                                       <  2:1856327/150‑1     GCCTGGTGACCGAGCCGGTATTGGTGCTTTCCGTGTGGGAAGCCTTGTGCGAGGACGTCTGTTTCGAAAGCGGCTGGGACCGTGCGCGCCTGCCGTGCTCACTTGGCACCGACTGCCTGGTGCAGGCCCATCTGGACAGCCTGGCCCAGG                                                                                                                                                      <  2:31294/150‑1         GGTGACCGAGCCGGTATTGGTGCTTTCCGTGTGGGAAGCCTTGTGCGAGGACGTCTGTTTCGAAAGCGGCTGGGACCGTGCGCGCCTGCCGTGCTCACTTGGCACCGACTGCCTGGTGCAGGCCCATCTGGACAGCCTGGCCCAGGtcct                                                                                                                                                  <  2:1676194/150‑5                                                                                                    TGCTCACTTGGCACCGACTGCCTGGTGCAGGCCAATCTGGACAGCCTGGCCCAGGCAGTCGGTGCCAAGTGAGCACGGCAGGCGCGCACGGTCCCAGCCGCTTTCGAAACAGAC                                                                                           <  2:1950582/114‑1                                                                                                    TGCTCACTTGGCACCGACTGCCTGGTGCAGGCCAATCTGGACAGCCTGGCCCAGGCAGTCGGTGCCAAGTGAGCACGGCAGGCGCGCACGGTCCCAGCCGCTTTCGAAACAGAC                                                                                           >  1:1950582/1‑114                                                                                                                      TGCCTGGTGCAGGCCCATCTGGACAGCCTGGCCCAGGCAGTCGGTGCCAAGTGAGCACGGCAGGCGCGCACGGTCCCAGCCGCTTTCGAAACAGACGTCCTCGCACAAGGCTTCCCACACGGAAAGCACCAATACCGGCTCGGTCACCAG                                     >  2:1223530/1‑150                                                                                                                          TGGTGCAGGCCCATCTGGACAGCCTGGCCCAGGCAGTCGGTGCCAAGTGAGCACGGCAGGCGCGCACGGTCCCAGCCGCTTTCGAAACAGACGTCCTCGCACAAGGCTTCCCACACGGAAAGCACCAATACCGGC                                                <  2:1692749/135‑1                                                                                                                          TGGTGCAGGCCCATCTGGACAGCCTGGCCCAGGCAGTCGGTGCCAAGTGAGCACGGCAGGCGCGCACGGTCCCAGCCGCTTTCGAAACAGACGTCCTCGCACAAGGCTTCCCACACGGAAAGCACCAATACCGGC                                                >  1:1692749/1‑135                                                                                                                           GGTGCAGGCCCATCTGGACAGCCTGGCCCAGGCAGTCGGTGCCAAGTGAGCACGGCAGGCGCGCACGGTCCCAGCCGCTTTCGAAACAGACGTCCTCGCACAAGGCTTCCCACACGGAAAGCACCAATACCGGCTCGGTCACCAGGCTGG                                <  1:1223530/150‑1                                                                                                                                                       cattCAGTCGGTTCCAAGTGAGCACGGCAGGCGCGCACGGTCCCAGCCGCTTTCGAAACAGACGTCCTCGCACAAGGCTTCCCACACGGAAAGCACCAATACCGGCTCGGTCACCAGGCTGGGCTGTTCGGTGTCCATCCAGGCCAGGTC    >  2:1844920/5‑150                                                                                                                                                       CAGGCAGTCGGTGCCAAGTGAGCACGGCAGGCGCGCACGGTCCCAGCCGCTTTCGAAACAGACGTCCTCGCACAAGCAGCCGCCCGCGGAAAGCACCAATACCGGCTCGAACACCAGGCTCCGCTGTTCGGTGTCCATCCAGGCCAGGTC    >  1:1621980/1‑150                                                                                                                                                        AGGCAGTCGGTGCCAAGTGAGCACGGCAGGCGCGCACGGTCCCAGCCGCTTTCGAAACAGACGTCCTCGCACAAGGCTTCCCACACGGAAAGCACCAATACCGGCTCGGTCGCCAGGATCGTCTGTTCGGTGTCCATCCAGGCCAGGTCG   >  2:1230290/1‑150                                                                                                                                                         GGCAGTCGGTGCCAAGTGAGCACGGCAGGCGCGCACGGTCCCAGCCGCTTTCGAAACAGACGTCCTCGCACAAGGCTTCCCACACGGAAAGCACCAATACCGGCTCGGTCACCAGGCTGGGCTGTTCGGTGTCCATCCAGGCCAGGTCGA  <  1:2208928/150‑1                                                                                                                                                         GGCAGTCGGTGCCAAGTGAGCACGGCAGGCGCGCACGGTCCCAGCCGCTTTCGAAACAGACGTCCTCGCACAAGGCTTCCCACACGGAAAGCACCAATACCGGCTCGGTCAACAGGCTGGGCTGTTCGGTGTCCATCCAGGCCAGGTCGA  >  1:622817/1‑150                                                                                                                                                           CAGTCGGTGCCAAGTGAGCACGGCAGGCGCGCACGGTCCCAGCCGCTTTCGAAACAGACGTCCTCGCACAAGGCTTCCCACACGGAAAGCACC                                                         >  2:1887159/1‑93                                                                                                                                                           CAGTCGGTGCCAAGTGAGCACGGCAGGCGCGCACGGTCCCAGCCGCTTTCGAAACAGACGTCCTCGCACAAGGCTTCCCACACGGAAAGCACC                                                         <  1:1887159/93‑1                                                                                                                                                                                                                                                                                                                CCCAGCCTGGTGACCGAGCCGGTATTGGTGCTTTCCGTGTGGGAAGCCTTGTGCGAGGACGTCTGTTTCGAAAGCGGCTGGGACCGTGCGCGCCTGCCGTGCTCACTTGGCACCGACTGCCTGGTGCAGGCCCATCTGGACAGCCTGGCCCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/619124‑618970 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggcAGTCGGTGCCAAGTGAGCACGGCAGGCGCGCACGGTCCCAGCCGCTTTCGAAACAGACGTCCTCGCACAAGGCTTCCCACACGGAAAGCACCAATACCGGCTCGGTCACCAGGCTGGGCTGTTCGGTGTCCATCCAGGCCAGGTCGA  >  NC_002947/619007‑619153

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.