| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1452353 | 108 (1.220) | 8 (0.090) | 7/236 | NT | 7.5% | coding (508/1542 nt) | PP_1271 | putative Multidrug efflux MFS transporter |
| ? | NC_002947 | = 1452371 | 95 (1.120) | coding (526/1542 nt) | PP_1271 | putative Multidrug efflux MFS transporter | |||||
TGCACAGCCTGATGTTGCTGCGCGTACTGCAGGGCTTTGCCGCTGGCGCCTTGCCGCCGATGCTGATGAGCGTGGCCCTGCGCTTTCTGCCGCCAGGTATCAAGGTCTATGGCCTGGCCTGCTACGCCCTGACCGCCACCTTTGGCCCCAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1452201‑1452353‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaccCCGCCAGCGGCGTGCCGAGGTTGGGGCCAAAGGTGGCGGTCAGGGCGTAGCAGGCCAGGCCATAGACCTTGATACCTGGCGGCAGAAAGCGCAGGGCCACGCTCATCAGCATCGGCGGCAAGGCGCCAGCGGCAAAGCCCTGCAGTAC < NC_002947/1452371‑1452224 TGCACAGCCTGATGTTGCTGCGCGTACTGCAGGGCTTTGCCGCTGGCGCCTTGCCGCCGATGCTGATGAGCGTGGCCCTGCGCTTTCTGCCGCCAGGTATCAAGGTCTATGGCCTGGCCTGCTACGCCCTGACCGCCACCTTTGGCCCCA > 2:1694951/1‑150 acgGCCTGATGTTGCTGCGCGTACTGCAGGGCTTTGCCGCTGGCGCCTTGCCGCCGATGCTGATGAGCGTGGCCCTGCGCTTTCTGCCCCCAGGTATCAAGGTCTATGGCCTGGCCTGCTACGCCCTGACCGCCACCTTTGGCCCCAACC > 1:2400156/4‑150 TTTCTGCCGCCAGGTATCAAGGTCTATGGCCTGGCCTGCTACGCCCTGACCGCCACCTTTGGCCCCAACCCCGCCAGCGGCGTGCCGAGGTT < 1:703037/92‑1 TTTCTGCCGCCAGGTATCAAGGTCTATGGCCTGGCCTGCTACGCCCTGACCGCCACCTTTGGCCCCAACCCCGCCAGCGGCGTGCCGAGGTT > 2:703037/1‑92 GCCAGGTATCAAGGTCTATGGCCTGGCCTGCTACGCCCTGACCGCCACCTTTGGCCCCAACCCCGCCAGCGGCGTGCCG > 1:2049376/1‑79 GCCAGGTATCAAGGTCTATGGCCTGGCCTGCTACGCCCTGACCGCCACCTTTGGCCCCAACCCCGCCAGCGGCGTGCCG < 2:2049376/79‑1 GTCTATGGCCTGGCCTGCTACGCCCTGACCGCCACCTTTGGCCCCAACCCCGCCAGCGGCGTGCCGAGGTT > 1:59910/1‑71 GTCTATGGCCTGGCCTGCTACGCCCTGACCGCCACCTTTGGCCCCAACCCCGCCAGCGGCGTGCCGAGGTT < 2:59910/71‑1 CCTTTGGCCACAACCCCGCCAGCGGCGTGCCGAGGTTGGGGCCAAAGGTGGCGGTCAGGGCGTAGCAGGCCAG < 1:1090480/73‑1 CCTTTGGCCACAACCCCGCCAGCGGCGTGCCGAGGTTGGGGCCAAAGGTGGCGGTCAGGGCGTAGCAGGCCAG > 2:1090480/1‑73 AACCCCGCCAGCGGCGTGCCGAGGTTGGGGCCAAAGGTGGCGGTCAGGGCGTAGCAGGCCAGGCCATAGACCTTGATACCTGGCGGCAGAAAGCGCAGGGCCACGCTCATCAGCATCGGCGGCAAGGCGCCAGCGGCAAAGCCCTGCAGT < 2:1163397/150‑1 ACCCCGCCAGCGGCGTGCCGAGGTTGGGGCCAAAGGTGGCGGTCAGGGCGTAGCAGGCCAGGCCATAGACCTTGATACCTGGCGGCAGAAAGCGCAGGGCCACGCTCATCAGCATCGGCGGCAAGGCGCCAGCGGCAAAGCCCTGCAGTA > 1:1608195/1‑150 CCCCGCCAGCGGCGTGCCGAGGTTGGGGCCAAAGGTGGCGGTCAGGGCGTAGCAGGCCAGGCCATAGACCTTGATACCTGGCGGCAGAAAGCGCAGGGCCACGCTCATCAGCATCGGCGGCAAGGCGCCAGCGGCAAAGCCCTGCAGTAC < 2:1930824/150‑1 TGCACAGCCTGATGTTGCTGCGCGTACTGCAGGGCTTTGCCGCTGGCGCCTTGCCGCCGATGCTGATGAGCGTGGCCCTGCGCTTTCTGCCGCCAGGTATCAAGGTCTATGGCCTGGCCTGCTACGCCCTGACCGCCACCTTTGGCCCCAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1452201‑1452353‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaccCCGCCAGCGGCGTGCCGAGGTTGGGGCCAAAGGTGGCGGTCAGGGCGTAGCAGGCCAGGCCATAGACCTTGATACCTGGCGGCAGAAAGCGCAGGGCCACGCTCATCAGCATCGGCGGCAAGGCGCCAGCGGCAAAGCCCTGCAGTAC < NC_002947/1452371‑1452224 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |