| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1562365 = | 93 (1.050) | 8 (0.100) | 7/234 | NT | 9.6% | coding (65/1476 nt) | PP_1372 | hypothetical protein |
| ? | NC_002947 | 1562403 = | 63 (0.750) | coding (103/1476 nt) | PP_1372 | hypothetical protein | |||||
CCGGCAGCACCCAGGCCACAAAGGTCGCCTTTGACATCCGCGGCGAACACCGCCACCCCTGCGTCGCTGAACACCTCCGCCAGGCGCTGCAGGGTGACGGTCTTGCCAGTACCGGTTGCGCCAGCCACCAGACCGTGGCGGTTGGCCAGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1562518‑1562365‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcaACCGGTACTGGCAAGACCGTCACCCTGCAGCGCCTGGCGGAGGTGTTCAGCGACGCAGGGGTGGCGGTGTTCGCCGCGGATGTCAAAGGCGACCTTTGTGGCCTGGGTGCTGCCGGTGC > NC_002947/1562403‑1562521 CCGGCAGCACCCAGGCCACAAAGGTCGCCTTTGACATCCGCGGCGAACACCGCCACCCCTGCGTCGCTGAACACCTCCGCCAGGCGCTGCAGGGTGACGGTCTTGCCAGTACCGGTTGCGCCAGCCACCAGACCGTGGCGGTTGGCCAGG > 2:2374849/1‑150 CAGCACCCAGGCCACAAAGGTCGCCTTTGACATCCGCGGCGAACACCGCCACCCCTGCGTCGCTGAACACCTCCGCCAGGCGCTGCAGGGTGACGGTCTTGCCAGTACCGGTTGCGCCAGCCACCAGACCGTGGCGGTTGGCCAGGCGCA < 1:1018416/150‑1 GTACCGGTTGCGCCAGCCACCAGACCGTGGCGGTTGGCCAGGCGCAACCGGTACTGGCAAGACCGTCACCCTGCAGCGCCTGGCGGAGGTGTTCAGCGACGCAGGGGTGGCGGTGTTCGCCGCGGATGTCAAAGGCGACCTTTGTGGCCT > 2:697693/1‑150 GTTGCGCCAGCCACCAGACCGTGGCGGTTGGCCAGGCGCAACCGGTACTGGCAAGACCGTCACCCTGCAGCGCCTGGCGGAGGTGTTCAGCGACGCAGGGGTGGCGGTGTTCGCCGCGGATGTCAAAGGCGACCTTTGTGGCCTGGGT < 1:1384309/148‑1 GTTGCGCCAGCCACCAGACCGTGGCGGTTGGCCAGGCGCAACCGGTACTGGCAAGACCGTCACCCTGCAGCGCCTGGCGGAGGTGTTCAGCGACGCAGGGGTGGCGGTGTTCGCCGCGGATGTCAAAGGCGACCTTTGTGGCCTGGGT > 2:1384309/1‑148 GTTGCGCCAGCCACCAGACCGTGGCGGTTGGCCAGGCGCAACCGGTACTGGCAAGACCGTCACCCTGCAGCGCCTGGCGGAGGTGTTCAGCGACGCAGGGGTGGCGGTGTTCGCCGCGGATGTCAAAGGCGACCTTT < 1:933466/137‑1 GTTGCGCCAGCCACCAGACCGTGGCGGTTGGCCAGGCGCAACCGGTACTGGCAAGACCGTCACCCTGCAGCGCCTGGCGGAGGTGTTCAGCGACGCAGGGGTGGCGGTGTTCGCCGCGGATGTCAAAGGCGACCTTT > 2:933466/1‑137 CAGCCACCAGACCGTGGCGGTTGGCCAGGCGCAACCGGTACTGGCAAGACCGTCACCCTGCAGCGCCTGGCGGAGGTGTTCAGCGACGCAGGGGTGGCGGTGTTCGCCGCGGATGTCAAAGGCGACCTTTGT > 1:1897330/1‑132 CAGCCACCAGACCGTGGCGGTTGGCCAGGCGCAACCGGTACTGGCAAGACCGTCACCCTGCAGCGCCTGGCGGAGGTGTTCAGCGACGCAGGGGTGGCGGTGTTCGCCGCGGATGTCAAAGGCGACCTTTGT < 2:1897330/132‑1 GCCACCAGACCGTGGCGGTTGGCCAGGCGCAACCGGTACTGGCAAGACCGTCACCCTGCAGCGCCTGGCGGAGGTGTTCAGCGACGCAGGGGTGGCGGTGTTCGCCGCGGATGTCAAAGGCGACCTTTGTGGCCTGGGTGCTGCCGGTGC < 1:697693/150‑1 CCGGCAGCACCCAGGCCACAAAGGTCGCCTTTGACATCCGCGGCGAACACCGCCACCCCTGCGTCGCTGAACACCTCCGCCAGGCGCTGCAGGGTGACGGTCTTGCCAGTACCGGTTGCGCCAGCCACCAGACCGTGGCGGTTGGCCAGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1562518‑1562365‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcaACCGGTACTGGCAAGACCGTCACCCTGCAGCGCCTGGCGGAGGTGTTCAGCGACGCAGGGGTGGCGGTGTTCGCCGCGGATGTCAAAGGCGACCTTTGTGGCCTGGGTGCTGCCGGTGC > NC_002947/1562403‑1562521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |