| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1581070 | 119 (1.340) | 10 (0.120) | 8/234 | NT | 7.9% | coding (369/3153 nt) | ttgB | efflux pump membrane protein TtgB |
| ? | NC_002947 | = 1581083 | 121 (1.440) | coding (356/3153 nt) | ttgB | efflux pump membrane protein TtgB | |||||
GTCACCTACACCCGCGGTACGCGAGATCGGGTCCTGCATGTTCGAGACGATATAGTTGGCCAGGTCGTCCTTGGTCATGCTGCCGTCTTCGGAGACCAGGCCGATCACCAGCAGGAAGTTCTTCACTGCTTTGGTGACGCGGATACCT‑‑‑TGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1580917‑1581070‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgcCGCAGGAAGTGCAGCAGCAAGGTATCCGCGTCACCAAAGCAGTGAAGAACTTCCTGCTGGTGATCGGCCTGGTCTCCGAAGACGGCAGCATGACCAAGGACGACCTGGCCAACTATATCGTCTCGAACATGCAGGACCCGATCTCGCGT < NC_002947/1581083‑1580935 GTCACCTACCCCAACCTTACGCGAGATCGGGTCCTGCATGTTCGAGACGATATAGTTGGGTCGGTCGCTCTTGGTCATGCAGCCGTCTTCGGAGACCAGGCCGATCACCAGCAGGAAGTTCTTCACTGCTTTGGTGACGCGGATACCT‑‑‑TG < 1:1977219/150‑1 TCACCTACACCCGCGGTACGCGAGATCGGGTCCTGCATGTTCGAGACGATATAGTTGGCCAGGTCGTCCTTGGTCATGCTGCCGTCTTCGGAGACCAGGCCGATCACCAGCAGGAAGTTCTTCACTGCTTTGGTGACGCGGATACCT‑‑‑TGC > 2:2206057/1‑150 TCACCTACACCCGCGGTACGCGAGATCGGGTCCTGCATGTTCGAGACGATATAGTTGGCCAGGTCGTCCTTGGTCATGCTGCCGTCTTCGGAGACCAGGCCGATCACCAGCAGGAAGTTCTTCACTGCTTTGGTGACGCGGATACCT‑‑‑TGC < 2:2126139/150‑1 TCACCTACACCCGCGGTACGCGAGATCGGGTCCTGCATGTTCGAGACGATATAGTTGGCCAGGTCGTCCTTGGTCATGCTGCCGTCTTCGGAGACCAGGCCGATCACCAGCAGGAAGTTCTTCACTGCTTTGGTGACGCGGATACCT‑‑‑TGC > 2:161434/1‑150 TCACCTACACCCGCGGTACGCGAGATCGGGTCCTGCATGTTCGAGACGATATAGTTGGCCAGGTCGTCCTTGGTCATGCTGCCGTCTTCGGAGACCAGGCCGATCACCAGCAGGAAGTTCTTCACTGCTTTGGTGACGCGGATACCT‑‑‑TGC > 1:109076/1‑150 ACCTACACCCGCGGTACGCGAGATCGGGTCCTGCATGTTCGAGACGATATAGTTGGCCAGGTCGTCCTTGGTCATGCTGCCGTCTTCGGAGACCAGGCCGATCACCAGCAGGAAGTTCTTCACTGCTTTGGTGACGCGGATACCT‑‑‑TGCTG > 1:2174994/1‑150 GCGAGATCGGGTCCTGCATGTTCGAGACGATATAGTTGGCCAGGTCGTCCTTGGTCATGCTGCCGTCTTCGGAGACCAGGCCGATCACCAGCAGGAAGTTCTTCACTGCTTTGGTGACGCGGATACCT‑‑‑TGCTGCCGCAGGAAGTGCAGCA < 1:902336/150‑1 GCGAGATCGGGTCCTGCATGTTCGAGACGATATAGTTGGCCAGGTCGTCCTTGGTCATGCTGCCGTCTTCGGAGACCAGGCCGATCACCAGCAGGAAGTTCTTCACTGCTTTGGTGACGCGGATACCT‑‑‑TGCTGCCGCAGGAAGTGCAGCA > 2:902336/1‑150 ATCGGGTCCTGCATGTTCGAGACGATATAGTTGGCCAGGTCGTCCTTGGTCATGCTGCCGTCTTCGGAGACCAGGCCGATCACCAGCAGGAAGTTCTTCACTGCTTTGGTGACGCGGATACCT‑‑‑TGCTGCCGCAGGAAGTGCAGCA < 1:787254/145‑1 ATCGGGTCCTGCATGTTCGAGACGATATAGTTGGCCAGGTCGTCCTTGGTCATGCTGCCGTCTTCGGAGACCAGGCCGATCACCAGCAGGAAGTTCTTCACTGCTTTGGTGACGCGGATACCT‑‑‑TGCTGCCGCAGGAAGTGCAGCA > 2:787254/1‑145 CGGGTCCTGCATGTTCGAGACGATATAGTTGGCCAGGTCGTCCTTGGTCATGCTGCCGTCTTCGGAGACCAGGCCGATCACCAGCAGGAAGTTCTTCACTGCTTTGGTGACGCGGATACCTTGCTGCTGCCGCAGGAAGTGCAGCAGCAA < 2:50527/150‑1 GGAGACCAGGCCGATCACCAGCAGGAAGTTCTTCACTGCTTTGGTGACGCGGATACCT‑‑‑TGCTGCCGCAGGAAGTGCAGCAGCAAG > 2:1602258/1‑85 GGAGACCAGGCCGATCACCAGCAGGAAGTTCTTCACTGCTTTGGTGACGCGGATACCT‑‑‑TGCTGCCGCAGGAAGTGCAGCAGCAAG < 1:1602258/85‑1 CCAGCAGGAAGTTCTTCACTGCTTTGGTGACGCGGATACCT‑‑‑TGCTGCCGCAGGAAGTGCAGCAGCAAG > 2:1550726/1‑68 CCAGCAGGAAGTTCTTCACTGCTTTGGTGACGCGGATACCT‑‑‑TGCTGCCGCAGGAAGTGCAGCAGCAAG < 1:1550726/68‑1 CTGCTTTGGTGACGCGGATACCT‑‑‑TGCTGCTGCCCTTCCTGCGGCAGCAAGGTATCCGCGTCACCAAAGCAGTGAAGAACTTCCTGCTGGTGATCGGCCTGGTCTCCGAAGACGGCAGCATGACCAAGGACGACCTGGCCAACTATATCGT > 1:476753/1‑150 TGCTGCCGCAGGAAGTGCAGCAGCAAGGTATCCGCGTCACCAAAGCAGTGAAGAACTTCCTGCTGGTGATCGGCCTGGTCTCCGAAGACGGCAGCATGACCAAGGACGACCTGGCCAACTATATCGTCTCGAACATGCAGGACCCGATCT > 2:2149031/1‑150 CCGCAGGAAGTGCAGCAGCAAGGTATCCGCGTCACCAAAGCAGTGAAGAACTTCCTGCTGGTGATCGGCCTGGTCTCCGAAGACGGCAGCATGACCAAGGACGACCTGGCCAACTATATCGTCTCGAACATGCAGGACCCGATCTCGCGT > 1:79083/1‑150 CCGCAGGAAGTGCAGCAGCAAGGTATCCGCGTCACCAAAGCAGTGAAGAACTTCCTGCTGGTGATCGGCCTGGTCTCCGAAGACGGCAGCATGACCAAGGACGACCTGGCCAACTATATCGTCTCGAACATGCAGGACCCGATCTCGCGT > 1:79051/1‑150 GTCACCTACACCCGCGGTACGCGAGATCGGGTCCTGCATGTTCGAGACGATATAGTTGGCCAGGTCGTCCTTGGTCATGCTGCCGTCTTCGGAGACCAGGCCGATCACCAGCAGGAAGTTCTTCACTGCTTTGGTGACGCGGATACCT‑‑‑TGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1580917‑1581070‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgcCGCAGGAAGTGCAGCAGCAAGGTATCCGCGTCACCAAAGCAGTGAAGAACTTCCTGCTGGTGATCGGCCTGGTCTCCGAAGACGGCAGCATGACCAAGGACGACCTGGCCAACTATATCGTCTCGAACATGCAGGACCCGATCTCGCGT < NC_002947/1581083‑1580935 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |