New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1583554 | 93 (1.050) | 6 (0.070) | 6/234 | NT | 6.1% | intergenic (+68/+50) | ttgR/PP_1388 | HTH‑type transcriptional regulator TtgR/EmrB/QacA family drug resistance transporter |
? | NC_002947 | = 1583575 | 95 (1.130) | intergenic (+89/+29) | ttgR/PP_1388 | HTH‑type transcriptional regulator TtgR/EmrB/QacA family drug resistance transporter |
TGTCGATCTGTTGGGTGATGTCGAAAAATGGGTCGACACCGGGCTGGATATGCTGCGCTTGAGCCCGGCTCTGCGCAAATGACACTTTGTTAAGGATTGTGAGGGAGTGTTTCCCCTTTGTGTTAAGGGGGTATTAAGGGCATGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1583405‑1583554 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccTTGTGCTGCGAACAGCCGCAGGGCGGCCATGCCCTTAATACCCCCTTAACACAAAGGGGAAACACTCCCTCACAATCCTTAACAAAGTGTCATTTGCGCAGAGCCGGGCTCAAGCGCAGCATATCCAGCCCGGTGTCGACCCATTTTTC < NC_002947/1583575‑1583427 TGTCGATCTGTTGGGTGATGTCGAAAAATGGGTCGACACCGGGTTGGATATGCTGCGCTTGAGCCCGGCTCTGCGCAAATGACACTTTGTTAAGGATTGTGAGGGAGTGTTTCCCCTTTGTGTTAAGGGGGTATTAAGGGCATGGCCCCC > 2:857854/1‑150 TGTCGATCTGTTGGGTGATGTCGAAAAATGGGTCGACACCGGGCTGGATATGCTGCGCTTGAGCCCGGCTCTGCGCAAATGACACTTTGTTAAGGATTGTGAGGGAGTGTTTCCCCTTTGTGTTAAGGGGGTATTAAGGGCATGGCCGCC < 2:1748760/150‑1 TGGATATGCTGCGCTTGAGCCCGGCTCTGCGCAAATGACACTTTGTTAAGGATTGTGAGGGAGTGTTTCCCCTTTGTGTTAAGGGGGTATTAAGGGCATGGCCGCCTTGTGCTGCGAACAGCCGCAGGGCGGCCATGCCCT < 1:1077148/141‑1 TGGATATGCTGCGCTTGAGCCCGGCTCTGCGCAAATGACACTTTGTTAAGGATTGTGAGGGAGTGTTTCCCCTTTGTGTTAAGGGGGTATTAAGGGCATGGCCGCCTTGTGCTGCGAACAGCCGCAGGGCGGCCATGCCCT > 2:1077148/1‑141 ACTTTGTTAAGGATTGTGAGGGAGTGTTTCCCCTTTGTGTTAAGGGGGTATTAAGGGCATGGCCGCCTTGTGCTGCGAACAGCCGCAGGGCGG > 1:218199/1‑93 ACTTTGTTAAGGATTGTGAGGGAGTGTTTCCCCTTTGTGTTAAGGGGGTATTAAGGGCATGGCCGCCTTGTGCTGCGAACAGCCGCAGGGCGG < 2:218199/93‑1 TGTTTCCCCTTTGTGTTAAGGGGGTATTAAGGGCATGGCCGCCTTGTGCTGCGAACAGCCGCAGGGCGGCCATG > 1:1168554/1‑74 TGTTTCCCCTTTGTGTTAAGGGGGTATTAAGGGCATGGCCGCCTTGTGCTGCGAACAGCCGCAGGGCGGCCATG < 2:1168554/74‑1 CCTTGTGCTGCGAACAGCCGCAGGGCGGCCATGCCCTTAATACCCCCTTAACACAAAGGGGAAACACTCCCTCACAATCCTTAACAAAGTGTCATTTGCGCAGAGCCGGGCTCAAGCGCAGCATATCCAGCCCGGT < 1:1015267/136‑1 CCTTGTGCTGCGAACAGCCGCAGGGCGGCCATGCCCTTAATACCCCCTTAACACAAAGGGGAAACACTCCCTCACAATCCTTAACAAAGTGTCATTTGCGCAGAGCCGGGCTCAAGCGCAGCATATCCAGCCCGGT > 2:1015267/1‑136 CTTGTGCTGCGAACAGCCGCAGGGCGGCCATGCCCTTAATACCCCCTTAACACAAAGGGGAAACACTCCCTCACAATCCTTAACAAAGTGTCATTTGCGCAGAGCCGGGCTCAAGCGCAGCATATCCAGCCCGGTGTCGACCCATTTTTC < 1:1148012/150‑1 TGTCGATCTGTTGGGTGATGTCGAAAAATGGGTCGACACCGGGCTGGATATGCTGCGCTTGAGCCCGGCTCTGCGCAAATGACACTTTGTTAAGGATTGTGAGGGAGTGTTTCCCCTTTGTGTTAAGGGGGTATTAAGGGCATGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1583405‑1583554 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccTTGTGCTGCGAACAGCCGCAGGGCGGCCATGCCCTTAATACCCCCTTAACACAAAGGGGAAACACTCCCTCACAATCCTTAACAAAGTGTCATTTGCGCAGAGCCGGGCTCAAGCGCAGCATATCCAGCCCGGTGTCGACCCATTTTTC < NC_002947/1583575‑1583427 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |