New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2436708 | 103 (1.160) | 5 (0.070) +TCGTTACAGAACAGATTGACCAGCCTGGAT |
4/186 | NT | 6.8% | intergenic (+243/‑416) | PP_2134/fadB | transposase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase |
? | NC_002947 | = 3973164 | 79 (0.890) | intergenic (+158/+27) | PP_3502/PP_3503 | transposase/sigma‑54 dependent transcriptional regulator |
GGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2436663‑2436708 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCCTGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAG < NC_002947/3973164‑3973090 |||||||||||||||||||||||||||||| GGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGTCGTTACAGAACAGATTGACCAGCCTGGATGCCCCCGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAG > 1:111913/1‑116 GGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGTCGTTACAGAACAGATTGACCAGCCTGGATGCCCCCGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAG < 2:111913/116‑1 GCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGTCGTTACAGAACAGATTGACCAGCCTGGATGCCCCCGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCA < 1:885507/139‑1 GCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGTCGTTACAGAACAGATTGACCAGCCTGGATGCCCCCGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCA > 2:885507/1‑139 GCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCCGTTACAGAAGAGATTGACCAGCCTGGATGCCCCCGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGTCCTCTCTCAGCAACCTCGAG > 2:1894140/1‑150 |||||||||||||||||||||||||||||| GGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2436663‑2436708 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCCTGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAG < NC_002947/3973164‑3973090 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |