| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2687631 = | 81 (0.910) | 5 (0.060) | 5/230 | NT | 6.4% | coding (134/2388 nt) | PP_2354 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | 2687656 = | 70 (0.850) | coding (109/2388 nt) | PP_2354 | two‑component system sensor histidine kinase/response regulator | |||||
GCAACTGAGGCCGCCGCAACGATGCAGCAAACGCCGTTGAAACTACTGATGGTCGAAGACAGCTCGATGGACGCTGAGCTTACCCTGATGCGCCTGGAGCGCAGCGGGCTGCATGTGCAGTCGCAGCTGGTGTTCGACCATGCGGGT‑GTCGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2687785‑2687631‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgaacaCCAGCTGCGACTGCACATGCAGCCCGCTGCGCTCCAGGCGCATCAGGGTAAGCTCAGCGTCCATCGAGCTGTCTTCGACCATCAGTAGTTTCAACGGCGTTTGCTGCATCGTTGCGGCGGCCTCAGTTGCTACCGCGACGGTTCAGTCG > NC_002947/2687656‑2687804 GCAACTGAGGCCGCCGCAACGATGCAGCAAACGCCGTTGAAACTACTGATGGTCGAAGACAGCTCGATGGACGCTGAGCTTACCCTGATGCGCCTGGAGCGCAGCGGGCTGCATGTGCAGTCGCAGCTGGTGTTCGACCATGCGGGT‑GTC > 1:1086372/1‑150GCAACTGAGGCCGCCGCAACGATGCAGCAAACGCCGTTGAAACTACTGATGGTCGAAGACAGCTCGATGGACGCTGAGCTTACCCTGATGCGCCTGGAGCGCAGCGGGCTGCATGTGCAGTCGCAGCTGGTGTTCGACCATGCGGGT‑GTC > 1:689433/1‑150 CTGAGGCCGCCGCAACGATGCAGCAAACGCCGTTGAAACTACTGATGGTCGAAGACAGCTCGATGGACGCTGAGCTTACCCTGATGCGCCTGGAGCGCAGCGGGCTGCATGTGCAGTCGCAGCTGGTGTTCGACCATGCGGGT‑GTCGAAC < 2:1976670/150‑1 TGAGGCCGCCGCAACGATGCAGCAAACGCCGTTGAAACTACTGATGGTCGAAGACAGCTCGATGGACGCTGAGCTTACCCTGATGCGCCTGGAGCGCAGCGGGCTGCATGTGCAGTCGCAGCTGGTGTTCGACCATGCGGGT‑GTCGAACA > 2:2103269/1‑150 GCAGCAAACGCCGTTGAAACTACTGATGGTCGAAGACAGCTCGATGGACGCTGAGCTTACCCTGATGCGCCTGGAGCGCAGCGGGCTGCATGTGCAGTCGCAGCTGGTGTTCGA‑CACCCGCATGGTCGAACACCAGCTGCGACTGCACAT > 2:1963268/1‑150 CAAACGCCGTTGAAACTACTGATGGTCGAAGACAGCTCGATGGACGCTGAGCTTACCCTGATGCGCCTGGAGCGCAGCGGGCTGCATGTGCAGTCGCAGCTGGTGTTCGA‑CACCCGCATGGTCGAACACCAGCTGCGACTGCACATGCAG < 1:1963268/150‑1 GTTGAAACTACTGATGGTCGAAGACAGCTCGATGGACGCTGAGCTTACCCTGATGCGCCTGGAGCGCAGCGGGCTGCATGTGCAGTCGCAGCTGGTGTTCGACCATGCGGGT‑GTCGAA > 1:1491981/1‑118 GTTGAAACTACTGATGGTCGAAGACAGCTCGATGGACGCTGAGCTTACCCTGATGCGCCTGGAGCGCAGCGGGCTGCATGTGCAGTCGCAGCTGGTGTTCGACCATGCGGGT‑GTCGAA < 2:1491981/118‑1 GAAACTACTGATGGTCGAAGACAGCTCGATGGACGCTGAGCTTACCCTGATGCGCCTGGAGCGCAGCGGGCTGCATGTGCAGTCGCAGCTGGTGTTCGA‑CACCCGCATGGTCGAACACCAGCTGCGACTGCACA < 1:1030246/134‑1 GAAACTACTGATGGTCGAAGACAGCTCGATGGACGCTGAGCTTACCCTGATGCGCCTGGAGCGCAGCGGGCTGCATGTGCAGTCGCAGCTGGTGTTCGA‑CACCCGCATGGTCGAACACCAGCTGCGACTGCACA > 2:1030246/1‑134 TGTTCGACCATGCGGGT‑GTCGAACACCAGCTGCGACTGCACATGCAGCCCGCTGCGCTCCAGGCGCATCAGGGTAAGCTCAGCGTCCATCGAGCTGTCTTCGACCATCAGTAGTTTCAACGGCGTTTGCTGCATCGTTGCGGCGGCCTCA > 1:707222/1‑150 TCGAACACCAGCTGCGACTGCACATGCAGCCCGCTGCGCTCCAGGCGCATCAGGGTAAGCTCAGCGTCCATCGAGCTGTCTTCGACCATCAGTAGTTTCAACGGCGTTTGCTGCATCGTTGCGGCGGCCTCAGTTGCTACCGCGACGGTT < 2:2089622/150‑1 GAACACCAGCTGCGACTGCACATGCAGCCCGCTGCGCTCCAGGCGCATCAGGGTAAGCTCAGCGTCCATCGAGCTGTCTTCGACCATCAGTAGTTTCAACGGCGTTTGCTGCATCGTTGCGGCGGCCTCAGTTGCTACCGCGACGGTTCA > 2:1526942/1‑150 CACCAGCTGCGACTGCACATGCAGCCCGCTGCGCTCCAGGCGCATCAGGGTAAGCTCAGCGTCCATCGAGCTGTCTTCGACCATCAGTAGTTTCAACGGCGTTTGCTGCATCGTTGCGGCGGCCTCAGTTGCTACCGCGACGGTTCAGTC < 1:591204/150‑1 ACCAGCTGCGACTGCACATGCAGCCCGCTGCGCTCCAGGCGCATCAGGGTAAGCTCAGCGTCCATCGAGCTGTCTTCGACCATCAGTAGTTTCAACGGCGTTTGCTGCATCGTTGCGGCGGCCTCAGTTGCTACCGCGACGGTTCAGTCG < 1:960264/150‑1 GCAACTGAGGCCGCCGCAACGATGCAGCAAACGCCGTTGAAACTACTGATGGTCGAAGACAGCTCGATGGACGCTGAGCTTACCCTGATGCGCCTGGAGCGCAGCGGGCTGCATGTGCAGTCGCAGCTGGTGTTCGACCATGCGGGT‑GTCGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2687785‑2687631‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgaacaCCAGCTGCGACTGCACATGCAGCCCGCTGCGCTCCAGGCGCATCAGGGTAAGCTCAGCGTCCATCGAGCTGTCTTCGACCATCAGTAGTTTCAACGGCGTTTGCTGCATCGTTGCGGCGGCCTCAGTTGCTACCGCGACGGTTCAGTCG > NC_002947/2687656‑2687804 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |