| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2746368 | 59 (0.670) | 4 (0.050) | 4/230 | NT | 6.8% | intergenic (‑13/+157) | PP_2401/PP_2402 | membrane protein/sensor histidine kinase |
| ? | NC_002947 | = 2746383 | 55 (0.660) | intergenic (‑28/+142) | PP_2401/PP_2402 | membrane protein/sensor histidine kinase | |||||
CGAGCTACGTGCGGTGGCACGAATGGCACTGCGCAAGCCGTCTGGGTCGGGTTGGCTGGCCAGGACTATGGCGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2746212‑2746368‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actcccggTCACACAACCACTCCCCGGGAGTCCCTGATGAAAGCCCTCACCTTGCCCTCCGGCTGGAAGCTGTTCGCCGCCCTCGCCGGCCTGACCTTGGCGATGACCGCCATAGTCCTGGCCAGCCAACCCGACCCAGACGGCTTGCGCAGTGCCA < NC_002947/2746383‑2746235 CGAGCTACGTGCGGTGGCACGAATGGCACTGCGCAAGCCGTCTGGGTCGGGTTGGCTGGCCAGGACTATGGCGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGA < 1:1336269/150‑1 ccattCGTGCGGTGGCACGAATGGCACTGCGCAAGCCGTCTGGGTCGGGTTGGCTGGCCAGGACTATGGCGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACT > 2:1137499/6‑150 TACGTGCGGTGGCACGAATGGCACTGCGCAAGCCGTCTGGGTCGGGTTGGCTGGCCAGGACTATGGCGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCC < 2:187524/150‑1 GTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGTCACACAACCACTCCCCGGGAGTCC > 1:290727/1‑109 GTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGTCACACAACCACTCCCCGGGAGTCC < 2:290727/109‑1 ACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGTCACACAACCACTCCCCGG > 1:1054737/1‑69 ACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGTCACACAACCACTCCCCGG < 2:1054737/69‑1 TCCCGGTCACACAACCACTCCCCGGGAGTCCCTGATGAAATCCCTCACCTTGCCCTCCGGCTGGAAGCTGTTCGCCGCCCTCGCCGGCCTGACCTTGGCGATGACCGCCATAGTCCT > 1:1971277/1‑117 TCCCGGTCACACAACCACTCCCCGGGAGTCCCTGATGAAAGCCCTCACCTTGCCCTCCGGCTGGAAGCTGTTCGCCGCCCTCGCCGGCCTGACCTTGGCGATGACCGCCATAGTCCTGGCCAGCCAACCCGACCCAGACGGCTTGCGCAG > 2:1216205/1‑150 TCCCGGTCACACAACCACTCCCCGGGAGTCCCTGATGAAAGCCCTCACCTTGCCCTCCGGCTGGAAGCTGTTCGCCGCCCTCGCCGGCCTGACCTTGGCGATGACCGCCATAGTCCT < 2:1971277/117‑1 CCCGGTCACACAACCACTCCCCGGGAGTCCCTGATGAAAGCCCTCACCTTGCCCTCCGGCTGGAAGCTGTTCGCCGCCCTCGCCGGCCTGACCTTGGCGATGACCGCCATAGTCCTGGCCAGCCAACCCGACCCAGACGGCTTGCGCAGT < 1:1035747/150‑1 CCGGTCACACAACCACTACCCGGGAGTCCCTGATGAAAGCCCTCACCTTGCCCTCCGGCTGGAAGCTGTT > 1:742120/1‑70 CCGGTCACACAACCACTACCCGGGAGTCCCTGATGAAAGCCCTCACCTTGCCCTCCGGCTGGAAGCTGTT < 2:742120/70‑1 GTCACACAACCACTCCCCGGGAGTCCCTGATGAAAGCCCTCACCTTGCCCTCCGGCTGGAAGCTGTTCGCCGCCCTCGCCGGCCTGACCTTGGCTATGACCGCCATAGTCCTGGCCAGCCAACCCGACCCAGACGGCTTGCGCAGTGCCA > 2:88591/1‑150 CGAGCTACGTGCGGTGGCACGAATGGCACTGCGCAAGCCGTCTGGGTCGGGTTGGCTGGCCAGGACTATGGCGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2746212‑2746368‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actcccggTCACACAACCACTCCCCGGGAGTCCCTGATGAAAGCCCTCACCTTGCCCTCCGGCTGGAAGCTGTTCGCCGCCCTCGCCGGCCTGACCTTGGCGATGACCGCCATAGTCCTGGCCAGCCAACCCGACCCAGACGGCTTGCGCAGTGCCA < NC_002947/2746383‑2746235 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |