New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2746368	59 (0.670)	4 (0.050)	4/230	NT	6.8%	intergenic (‑13/+157)	PP_2401/PP_2402	membrane protein/sensor histidine kinase
	?	NC_002947	= 2746383	55 (0.660)					intergenic (‑28/+142)	PP_2401/PP_2402	membrane protein/sensor histidine kinase

TGGCACTGCGCAAGCCGTCTGGGTCGGGTTGGCTGGCCAGGACTATGGCGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGTTTGTAGAGGCGACCGCGCGTTTTACAGGAACGGCCCGATCAAGACACAAGGCCGTTCCCGCCAACGATCGCAGAAGCCATTCAGGTGA  >  NC_002947/2746235‑2746532                                                                                                                                                     |                                                                                                                                                        tGGCACTGCGCAAGCCGTCTGGGTCGGGTTGGCTGGCCAGGACTATGGCGGTCATAGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGAc                                                                                                                                                        >  2:88591‑M2/1‑149 (MQ=255)     aCTGCGCAAGCCGTCTGGGTCGGGTTGGCTGGCCAGGACTATGGCGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGAccggg                                                                                                                                                    <  1:1035747‑M2/150‑6 (MQ=255)      cTGCGCAAGCCGTCTGGGTCGGGTTGGCTGGCCAGGACTATGGCGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGAccggga                                                                                                                                                   >  2:1216205‑M2/1‑144 (MQ=255)           cAAGCCGTCTGGGTCGGGTTGGCTGGCCAGGACTATGGCGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGtc                                                                                                                                            >  1:1435045/1‑150 (MQ=255)            aaGCCGTCTGGGTCGGGTTGGCTGGCCAGGACTATGGCGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGTAGTGtct                                                                                                                                           <  1:1001170/150‑1 (MQ=255)              gCCGGCTGGGTCGGGTTGGCTGGCCAGGACTATGGCGGTCAGCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGCTGATGGCTTTCATCAGGGACTCCCGGGGACTGGTTGTGTGA‑‑CCGGGAGTGTCTCg                                                                                                                                         <  2:427750/150‑1 (MQ=255)               ccGTCTGGGTCGGGTTGGCTGGCCAGGACTATGGCGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGa                                                                                                                                        <  2:1035747/150‑1 (MQ=255)                cGTCTGGGTCGGGTTGGCTGGCCAGGACTATGGCGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAg                                                                                                                                       >  1:1523887/1‑150 (MQ=255)                 gTCTGGGTCGGGTTGGCTGGCCAGGACTATGGCGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAgg                                                                                                                                      <  2:419773/150‑1 (MQ=255)                    tGGGTCGGGTTGGCTGGCCAGGACTATGGCGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCgg                                                                                                                                   <  1:2311229/150‑1 (MQ=255)                    tGGGTCGGGTTGGCTGGCCAGGACTATGGCGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCGTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCgg                                                                                                                                   <  1:1492794/150‑1 (MQ=255)                     gggTCGGGTTGGCTGGCCAGGACTATGGCGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCggg                                                                                                                                  <  1:166000/150‑1 (MQ=255)                               ggctggcCAGGACTATGGCGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAg                                                                                                                        >  2:1483506/1‑150 (MQ=255)                               ggctggcCAGGACTATGGCGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAg                                                                                                                        <  2:143637/150‑1 (MQ=255)                               ggctggcCAGGACTATGGCGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAg                                                                                                                        <  1:1135583/150‑1 (MQ=255)                                       aGGACTATGGCGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGAccggga                                                                                                                                                   <  2:1971277‑M2/117‑7 (MQ=255)                                       aGGACTATGGCGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGATTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGAccggga                                                                                                                                                   >  1:1971277‑M2/1‑111 (MQ=255)                                         gACTATGGCGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAggg                                                                                                              <  1:348673/150‑1 (MQ=255)                                           cTATGGCGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAggggg                                                                                                            <  1:1896516/150‑1 (MQ=255)                                                gCGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCa                                                                                                       >  2:415537/1‑150 (MQ=255)                                                 cGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAg                                                                                                      <  1:415537/150‑1 (MQ=255)                                                     cATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTtgt                                                                                                  <  2:899890/150‑1 (MQ=255)                                                       tCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTtgtgg                                                                                                >  1:1459137/1‑149 (MQ=255)                                                         gCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTAt                                                                                              >  1:2275532/1‑150 (MQ=255)                                                          ccAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGAt                                                                                                          <  1:1586595/137‑1 (MQ=255)                                                          ccAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGAt                                                                                                          >  2:1586595/1‑137 (MQ=255)                                                           cAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCt                                                                                            >  2:1194747/1‑150 (MQ=255)                                                               gTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGttt                                                                                        <  2:43050/150‑1 (MQ=255)                                                               gTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGttt                                                                                        <  2:1260964/150‑1 (MQ=255)                                                                     ccGGCGAGGGCGGGAGACAGCTTCCAGCTGGGGGGGAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑ACGGGAGTGTCTGGAGGCGGGGTATCTGCAGTGTGTCCGGGGGATGCATTTGTGTATCTGTTTGTagag                                                                                  <  2:285205/150‑1 (MQ=255)                                                                                   gAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGTTTGTAGAGGCGACCGCGCGttt                                                                    >  2:1684735/1‑150 (MQ=255)                                                                                    aaCAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGTAGTGGTTGTGTGAccgg                                                                                                                                                     <  2:742120‑M2/70‑5 (MQ=255)                                                                                    aaCAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGTAGTGGTTGTGTGAccgg                                                                                                                                                     >  1:742120‑M2/1‑66 (MQ=255)                                                                                      cAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTAt                                                                                              <  2:1573186/121‑1 (MQ=255)                                                                                      cAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTAt                                                                                              >  1:1573186/1‑121 (MQ=255)                                                                                      cAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGTTTGTAGAGGCGACCGCGCGTTTTAc                                                                 >  2:1324508/1‑150 (MQ=255)                                                                                              aGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGTTTGTAGAGGCGACCGCGCGTTTTACAGGAACgg                                                         >  1:58256/1‑150 (MQ=255)                                                                                               gCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGTTTGTAGAGGCGACCGCGCGTTTTACAGGAACGGc                                                        >  1:1675941/1‑150 (MQ=255)                                                                                               gCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGTTTGTAGAGGCGACCGCGCGTTTTACAGGAACGGc                                                        <  2:1675941/150‑1 (MQ=255)                                                                                                 cGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑GCGGGAGTGTCTGGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTTTCTGTTGGTAGAGGCGACCGCGCGTTTTACAGGAACGGccc                                                      >  1:1118507/1‑150 (MQ=255)                                                                                                 cGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGTTTGTAGAGGCGACCGCGCGTTTTACAGGAACGGccc                                                      >  1:757377/1‑150 (MQ=255)                                                                                                    aGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGTTTGTAGAGGCGACCGCGCGTTTTACAGGAACGGCCCGAt                                                   <  1:1483506/150‑1 (MQ=255)                                                                                                     gggCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGTTTGTAGAGGCGACCGCGCGTTTTACAGGAACGGCCCGATc                                                  <  1:1093279/150‑1 (MQ=255)                                                                                                       gCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGTTTGTAGAGGCGACCGCGCGTTTTACAGGAACGGCCCGATCaa                                                <  2:2275532/150‑1 (MQ=255)                                                                                                         aaGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGCGAAGCCGGCA‑AGT‑TGGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGTTTGTAGAGGCGACCGCGCGTTTTACAGGAACGGCCCGATCAAGa                                              <  2:64092/150‑1 (MQ=255)                                                                                                             tGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGc                                                                                                                          <  2:1373544/70‑1 (MQ=255)                                                                                                             tGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGc                                                                                                                          >  1:1373544/1‑70 (MQ=255)                                                                                                                gggCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGTTTGTAGAGGCGACCGCGCGTTTTACAGGAACGGCCCGATCAAGACACAAgg                                       <  1:1194747/150‑1 (MQ=255)                                                                                                                gggCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGTTTGTAGAGGCGACCGCGCGTTTTACAGGAACGGCCCGATCAAGACACAAgg                                       <  2:1523887/150‑1 (MQ=255)                                                                                                                  gCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGTTTGTAGAGGCGACCGCGCGTTTTACAGGAACGGCCCGATCAAGACACAAGGcc                                     <  2:757377/150‑1 (MQ=255)                                                                                                                   cTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGAt                                                                                                          <  2:1087651/80‑1 (MQ=255)                                                                                                                   cTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGAt                                                                                                          >  1:1087651/1‑80 (MQ=255)                                                                                                                       catcaGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGTTTGTAGAGGCGACCGCGCGTTTTACAGGAACGGCCCGATCAAGACACAAGGCCGTTcc                                <  1:1324508/150‑1 (MQ=255)                                                                                                                          caGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGTTTGTAGAGGCGACCGCGCGTTTTACAGGAACGGCCCGATCAAGa                                              >  1:1723356/1‑133 (MQ=255)                                                                                                                          caGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGTTTGTAGAGGCGACCGCGCGTTTTACAGGAACGGCCCGATCAAGa                                              <  2:1723356/133‑1 (MQ=255)                                                                                                                             ggACTCCCGGGGAGTGGTTGTGTGAccgggagtccctgatgaaagccctcaccttgccctccggctggaagctgttcgccgccctcgccggcctgaccttggcgatgac                                                                     >  1:290727‑M2/1‑25 (MQ=255)                                                                                                                             ggACTCCCGGGGAGTGGTTGTGTGAccgggagtccctgatgaaagccctcaccttgccctccggctggaagctgttcgccgccctcgccggcctgaccttggcgatgac                                                                     <  2:290727‑M2/109‑85 (MQ=255)                                                                                                                             ggACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGTTTGTAGAGGCGACCGCGCGTTTTACAGGAACGGCCGGATCAAGACACAAGGc                                      >  1:1810576/1‑138 (MQ=255)                                                                                                                             ggACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGTTTGTAGAGGCGACCGCGCGTTTTACAGGAACGGCCCGATCAAGACACAAGGc                                      <  2:1810576/138‑1 (MQ=255)                                                                                                                                  cccGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGTTTGTAGAGGCGACCGCGCGTTTTACAGGAACGGCCCGATCAAGACACAAGGCCGTTCCCGCCAACGATc                     <  2:58256/150‑1 (MQ=255)                                                                                                                                   ccGGGGAGTGGTTGTGTGAccgggagtccctgatgaaagccctcaccttgccctccggctggaagctgt                                                                                                       <  2:1054737‑M2/69‑51 (MQ=255)                                                                                                                                   ccGGGGAGTGGTTGTGTGAccgggagtccctgatgaaagccctcaccttgccctccggctggaagctgt                                                                                                       >  1:1054737‑M2/1‑19 (MQ=255)                                                                                                                                   ccGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGTTTg                                                                                       <  1:471423/83‑1 (MQ=255)                                                                                                                                   ccGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGTTTg                                                                                       >  2:471423/1‑83 (MQ=255)                                                                                                                                   ccGGGGAGTGGTCGTGAAA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTATGTCAGGGGAATGCAATTGTGTATCTGTTTGTAGAGGCGACGGCGCGTTTTACAGGAACAGCCCGATCAAGACACAAGGCCGTTCCCGCCAACGCTCg                    >  2:577145/1‑150 (MQ=255)                                                                                                                                       ggAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAg                                                                                                                >  1:1717857/1‑54 (MQ=255)                                                                                                                                       ggAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAg                                                                                                                <  2:1717857/54‑1 (MQ=255)                                                                                                                                           tGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGTTTGTAGAGGCGACCGCGCGTTTTACAGGAACGGCCCGATCAAGACACAAGGCCGTTCCCGCCAACGATCGCAGAAGcc            >  1:1257771/1‑150 (MQ=255)                                                                                                                                                     a‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGTTTGTAGAGGCGACCGCGCGTTTTACAGGAACGGCCCGATCAAGACACAAGGCCGTTCCCGCCAACGATCGCAGAAGCCATTCAGGTGa  >  2:1204824/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                        TGGCACTGCGCAAGCCGTCTGGGTCGGGTTGGCTGGCCAGGACTATGGCGGTCATCGCCAAGGTCAGGCCGGCGAGGGCGGCGAACAGCTTCCAGCCGGAGGGCAAGGTGAGGGCTTTCATCAGGGACTCCCGGGGAGTGGTTGTGTGA‑‑CCGGGAGTGTCTCGAGGCGGGGTATCTGCAGTGTGTCAGGGGGATGCAGTTGTGTATCTGTTTGTAGAGGCGACCGCGCGTTTTACAGGAACGGCCCGATCAAGACACAAGGCCGTTCCCGCCAACGATCGCAGAAGCCATTCAGGTGA  >  NC_002947/2746235‑2746532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.