New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2942260	98 (1.110)	11 (0.130)	8/236	NT	10.4%	intergenic (‑18/‑1355)	PP_2575/PP_2577	hypothetical protein/paraquat‑inducible protein B
	?	NC_002947	= 2942265	96 (1.130)					intergenic (‑23/‑1350)	PP_2575/PP_2577	hypothetical protein/paraquat‑inducible protein B

GACGGTATTGCAATCGTTGATATCCAGTTGCATCTGCTGGCTGCTCTGGCCCTTGAGCGGCACCACCGACTGCGCCTGGGCGGCCGATGCTGCGCACAGCAGCATCAACAGGTAACTCCACGTGAACGTACGCATGGCACACCTCCACCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2942108‑2942260 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggcTTTCCGCCCGGTGGAGGTGTGCCATGCGTACGTTCACGTGGAGTTACCTGTTGATGCTGCTGTGCGCAGCATCGGCCGCCCAGGCGCAGTCGGTGGTGCCGCTCAAGGGCCAGAGCAGCCAGCAGATGCAACTGGATATCAACGATTG  <  NC_002947/2942265‑2942118                                                                                                                                                                                                                                                                                                               GACGGTATTGCAATCGTTGATATCCAGTTGCATCTGCTGGCTGCTCTGGCCCTTGAGCGGCACCACCGACTGCGCCTGGGCGGCCGATGCTGCGCACAGCAGCATCAACAGGTAACTCCACGTGAACGTACGCATGGCACACCTCCACCG                                                                                                                                                         >  2:1260398/1‑150            AATCGTTGATATCCAGTTGCATCTGCTGGCTGCTCTGGCCCTTGAGCGGCACCACCGACTGCGCCTGGGCGGCCGATGCTGCGCACAGCAGCATCAACAGGTAACTCCACGTGAACGTACGCATGGCACACCTCCACCGGGCTTTCCGCC                                                                                                                                              >  1:1562133/1‑150                GTTGATATCCAGTTGCATCTGCTGGCTGCTCTGGCCCTTGAGCGGCACCACCGACTGCGCCTGGGCGGCCGATGCTGCGCACAGCAGCATCAACAGGTAACTCCACGTGAACGTACGCATGGCACACCTCCACCGGGCTTTCCGCCCGGT                                                                                                                                          >  2:2215197/1‑150                GTTGATATCCAGTTGCATCTGCTGGCTGCTCTGGCCCTTGAGCGGCACCACCGACTGCGCCTGGGCGGCCGATGCTGCGCACAGCAGCATCAACAGGTAACTCCACGTGAACGTACGCATGGCACACCTCCACCGGGCTTTCCGCCCGGT                                                                                                                                          <  2:1562133/150‑1                   GATATCCAGTTGCATCTGCTGGCTGCTCTGGCCCTTGAGCGGCACCACCGACTGCGCCTGGGCGGCCGATGCTGCGCACAGCAGCATCAACAGGTAACTCCACGTGAACGTACGCATGGCACACCTCCACCGGGCTTTCCGCCCGGTGGA                                                                                                                                       <  1:1478725/150‑1                   GATATCCAGTTGCATCTGCTGGCTGCTCTGGCCCTTGAGCGGCACCACCGACTGCGCCTGGGCGGCCGATGCTGCGCACAGCAGCATCAACAGGTAACTCCACGTGAACGTACGCATGGCACACCTCCACCGGGCTTTCCGCCCGGTGGA                                                                                                                                       <  1:2215197/150‑1                                             TCTGGCCCTTGAGCGGCACCACCGACTGCGCCTGGGCGGCCGATGCTGCGCACAGCAGCATCAACAGGTAACTCCACGTGAACGTACGCATGGCACACCTCCACCGGGCTTTCCGCCCGGTGGA                                                                                                                                       >  2:511420/1‑124                                             TCTGGCCCTTGAGCGGCACCACCGACTGCGCCTGGGCGGCCGATGCTGCGCACAGCAGCATCAACAGGTAACTCCACGTGAACGTACGCATGGCACACCTCCACCGGGCTTTCCGCCCGGTGGA                                                                                                                                       <  1:511420/124‑1                                                                                                  AGCAGCATCAACAGGTAACTCCACGTGAACGTACGCATGGCACACCTCCACCGGGCTTTCCGCCCGGTGGA                                                                                                                                       >  1:1830244/1‑71                                                                                                  AGCAGCATCAACAGGTAACTCCACGTGAACGTACGCATGGCACACCTCCACCGGGCTTTCCGCCCGGTGGA                                                                                                                                       <  2:1830244/71‑1                                                                                                                                    GCATGGCACACCTCCACCGGGCGGAAAGCCCGGTGGAGGTGTGCCATGCGTACGTTCACGTGGAGTTACCTGTTGATGCTGCTGTGCGCAGCATCGGCCGCCCAGGCGCAGTCGGTGGTGCCGCTCAAGGGCCA                                      <  2:159535/134‑1                                                                                                                                    GCATGGCACACCTCCACCGGGCGGAAAGCCCGGTGGAGGTGTGCCATGCGTACGTTCACGTGGAGTTACCTGTTGATGCTGCTGTGCGCAGCATCGGCCGCCCAGGCGCAGTCGGTGGTGCCGCTCAAGGGCCA                                      >  1:159535/1‑134                                                                                                                                                     CGGGCTTTCCGCCCGGTGGAGGTGTGCCATGCGTACGTTCACGTGGAGTTACCTGTTGATGCTGCTGTGCGCAGCATCGGCCGCCCAGGCGCAGTCGGTGGTGCCGCTCAAGGGCCAGAGCAGCCAGCAGATGCAACTGGATATCAACGA     <  2:1170185/150‑1                                                                                                                                                     CGGGCTTTCCGCCCGGTGGAGGTGTGCCATGCGTACGTTCACGTGGAGTTACCTGTTGATGCGCCTTCTCCTACTATCGGCCGCCCAGGCGCAGTCGGTGGTGCCGCTCAAGGGCCAGAGCAGCCAGCAGATGCAACTGGATATCAACGA     <  1:1021327/150‑1                                                                                                                                                      GGGCTTTCCGCCCGGTGGAGGTGTGCCATGCGTACGTTCACGTGGAGTTACCTGTTGATGCTGCTGTGCGCAGCATCGGCCGCCCAGGCGCAGTCGGTGGTGCCGCTCAAGGGCCAGAGCAGCCAGCAGATGCAACTGGATATCAACGAT    >  1:681620/1‑150                                                                                                                                                      GGGCTTTCCGCCCGGTGGAGGTGTGCCATGCGTACGTTCACGTGGAGTTACCTGTTGATGCTGCTGTGCGCAGCATCGGCCGCCCAGGCGCAGTCGG                                                         >  1:505272/1‑97                                                                                                                                                      GGGCTTTCCGCCCGGTGGAGGTGTGCCATGCGTACGTTCACGTGGAGTTACCTGTTGATGCTGCTGTGCGCAGCATCGGCCGCCCAGGCGCAGTCGG                                                         >  1:242182/1‑97                                                                                                                                                      GGGCTTTCCGCCCGGTGGAGGTGTGCCATGCGTACGTTCACGTGGAGTTACCTGTTGATGCTGCTGTGCGCAGCATCGGCCGCCCAGGCGCAGTCGG                                                         <  2:242182/97‑1                                                                                                                                                      GGGCTTTCCGCCCGGTGGAGGTGTGCCATGCGTACGTTCACGTGGAGTTACCTGTTGATGCTGCTGTGCGCAGCATCGGCCGCCCAGGCGCAGTCGG                                                         <  2:505272/97‑1                                                                                                                                                       GGCTTTCCGCCCGGTGTAGGTGTGCCATGCGTACGTTCACGTGGAGTTACCTTTTGATGCTGCTGTGCGCAGCATCGGCCGCCCAGGCGCAGTCGGTGGTGCCGCTCAAGGGCCAGAGCAGCCAGCAGATGCAACTGGATATCAACGATT   <  1:976174/150‑1                                                                                                                                                       GGCTTTCCGCCCGGTGGAGGTGTGCCATGCGTACGTTCACGTGGAGTTACCTGTTGATGCTGCTGTGCGCAGCATCGGCCGCCCAGGCGCAGTCGGTGGTGCCGCTCAAGGGCCAGAGCAGCCAGCAGATGCAACTGGATATCAACGATT   >  1:1720791/1‑150                                                                                                                                                        GCTTTCCGCCCGGTGGAGGTGTGCCATGCGTACGTTCACGTGGAGTTACCTGTTGATGCTGCTGTGCGCAGCATCGGCCGCCCAGGCGCAGTCGGTGGTGCCGCTCAAGGGCCAGAGCAGCCAGCAGATGCAACTGGATATCAACGATTG  <  2:1185935/150‑1                                                                                                                                                        GCTTTCCCCCCGGGGGAGGGGGGGCTTGCGTACGTTCACGTGGAGTTACCTGTTGATGGTGGTGTGCGCAGCATCGGGCGGCCAGGCGCAGTCGGTGGTGCCGCTCAAGGGCCAGAGCAGCCAGCAGATGCAACTGGATATCAACGATTG  <  2:279475/150‑1                                                                                                                                                                                                                                                                                                               GACGGTATTGCAATCGTTGATATCCAGTTGCATCTGCTGGCTGCTCTGGCCCTTGAGCGGCACCACCGACTGCGCCTGGGCGGCCGATGCTGCGCACAGCAGCATCAACAGGTAACTCCACGTGAACGTACGCATGGCACACCTCCACCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2942108‑2942260 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggcTTTCCGCCCGGTGGAGGTGTGCCATGCGTACGTTCACGTGGAGTTACCTGTTGATGCTGCTGTGCGCAGCATCGGCCGCCCAGGCGCAGTCGGTGGTGCCGCTCAAGGGCCAGAGCAGCCAGCAGATGCAACTGGATATCAACGATTG  <  NC_002947/2942265‑2942118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.