| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3159140 = | 105 (1.190) | 8 (0.100) | 7/234 | NT | 7.3% | coding (1116/2097 nt) | opuA | glycine betaine ABC transporter ATP‑binding protein/permease |
| ? | NC_002947 | 3159173 = | 102 (1.210) | coding (1149/2097 nt) | opuA | glycine betaine ABC transporter ATP‑binding protein/permease | |||||
AGTAGCAGCGCCAAGGGTAAAGCGACACCCGGTGAGTCACGGCCGTGGCCGTGCAGGCTCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3159202‑3159140‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcaccGGGTGTCGCTTTACCCTTGGCGCTGCTACTGGTGAGTCAGGCACTGACCGTATGGCGCGCCCTGACGCCAGAGGCTGCCGGGACATTGGTGCAGTTTCCCTCCGATCGCGACAGTATGCTGGCGGCCGCTGGTGCCATCGACGCGTTGA > NC_002947/3159173‑3159321 AGTAGCAGCGCCAAGGGTAAAGCGACACCCGGTGAGTCACGGCCGTGGCCGTGCAGGCTCAC > 1:635016/1‑62AGTAGCAGCGCCAAGGGTAAAGCGACACCCGGTGAGTCACGGCCGTGGCCGTGCAGGCTCAC < 2:635016/62‑1 ACCCGGTGAGTCACGGCCGTGGCCGTGCAGGCTCACCGGGTGTCGCTTTACCCTTGGCGCTGCTACTGGTGAGTCAGGCACTGACCGTATGGCGCGCCCTGACGCCAGA < 1:1184274/109‑1 ACCCGGTGAGTCACGGCCGTGGCCGTGCAGGCTCACCGGGTGTCGCTTTACCCTTGGCGCTGCTACTGGTGAGTCAGGCACTGACCGTATGGCGCGCCCTGACGCCAGA > 2:1184274/1‑109 CCGGTGAGTCACGGCCGTGGCCGTGCAGGCTCACCGGGTGTCGCTTTACCCTTGGCGCTGCTACTGGTGAGTCAGGCACTGACCGTATGGCGCGCCCTGACGCCAGA < 1:537311/107‑1 CCGGTGAGTCACGGCCGTGGCCGTGCAGGCTCACCGGGTGTCGCTTTACCCTTGGCGCTGCTACTGGTGAGTCAGGCACTGACCGTATGGCGCGCCCTGACGCCAGA > 2:537311/1‑107 CGGTGAGTCACGGCCGTGGCCGTGCAGGCTCACCGGGTGTCGCTTTACCCTTGGCGCTGCTACTGGTGAGTCAGGCACTGACCGTATGGCGCGCCCTGACGCCAGAGGCTGCCGGGACATTGGTGCAGTTTCCCTCCGATCGCGACAGTA > 2:986532/1‑150 GGTGAGTCACGGCCGTGGCCGTGCAGGCTCACCGGGTGTCGCTTTACCCTTGGCGCTGCTA < 1:848623/61‑1 GGTGAGTCACGGCCGTGGCCGTGCAGGCTCACCGGGTGTCGCTTTACCCTTGGCGCTGCTA > 2:848623/1‑61 GTGGCCGTGCAGGCTCACCGGGTGTCGCTTTACCCTTGGCGCTGCTACTGGGGAGTCAGGCACTGACCGTATGGCGCGCCCTGACGCCAGAGGCTGCCGGGACATTGGTGCAGTTTCCCTCCGATCGCGACAGTATGCTGGCGGCCGCTG > 1:1024440/1‑150 TCACCGGGTGTCGCTTTACCCTTGGCGCTGCTACTGGTGAGTCAGGCACTGACCGTATGGCGCGCCCTGACGCCAGAGGCTGCCGGGACATTGGTGCAGTTTCCCTCCGATCGCGACAGTATGCTGGCGGCCGCTGGTGCCATCGACGCG > 2:1250879/1‑150 ACCGGGTGTCGCTTTACCCTTGGCGCTGCTACTGGTGAGTCAGGCACTGACCGTATGGCGCGCCCTGACGCCAGAGGCTGCCGGGACATTGGTGCAGTTTCCCTCCGATCGCGACAGTATGCTGGCGGCCGCTGGTGCCATCGACGCGTT > 1:2085184/1‑150 CCGGGTGTCGCTTTACCCTTGGCGCTGCTACTGGTGAGTCAGGCACTGACCGTATGGCGCGCCCTGACGCCAGAGGCTGCCGGGACATTGGTGCAGTTTCCCTCCGATCGCGACAGTATGCTGGCGGCCGCTGGTGCCATCGACGCGTTG > 2:1789387/1‑150 CCGGGTGTCGCTTTACCCTTGGCGCTGCTACTGGTGAGTCAGGCACTGACCGTATGGCGCGCCCTGACGCCAGAGGCTACCGGGCCACTGGTGCAGTTTCGCTCCGATCGCGACAGTATGCTGGCGGCCGCTGGTGCCATCGACGCGTTG > 2:879108/1‑150 CGGGTGTCGCTTTACCCTTGGCGCTGCTACTGGTGAGTCAGGCACTGACCGTATGGCGCGCCCTGACGCCAGAGGCTGCCGGGACATTGGTGCAGTTTCCCTCCGATCGCGACAGTATGCTGGCGGCCGCTGGTGCCATCGACGCGTTGA > 2:800645/1‑150 AGTAGCAGCGCCAAGGGTAAAGCGACACCCGGTGAGTCACGGCCGTGGCCGTGCAGGCTCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3159202‑3159140‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcaccGGGTGTCGCTTTACCCTTGGCGCTGCTACTGGTGAGTCAGGCACTGACCGTATGGCGCGCCCTGACGCCAGAGGCTGCCGGGACATTGGTGCAGTTTCCCTCCGATCGCGACAGTATGCTGGCGGCCGCTGGTGCCATCGACGCGTTGA > NC_002947/3159173‑3159321 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |