| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3251122 = | 96 (1.080) | 8 (0.090) | 4/238 | NT | 8.3% | coding (464/546 nt) | ureJ | urease accessory protein UreJ |
| ? | NC_002947 | 3251156 = | 84 (0.980) | coding (498/546 nt) | ureJ | urease accessory protein UreJ | |||||
TAAAACCACCCACCGGCAAGCCGGGGCTGGCCAACTGCAGCAGGCGCAGCAGCGCCAGGTCGCTGTTCATCAACCGGCCAGTACCAGCGCGGCGCCGGCCAACAGGCCACCGCCAAAGGCCTTCTGCAGGCCGCTGTGGCGGC‑‑GCAGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3251273‑3251122‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcCTTTGGCGGTGGCCTGTTGGCCGGCGCCGCGCTGGTACTGGCCGGTTGATGAACAGCGACCTGGCGCTGCTGCGCCTGCTGCAGTTGGCCAGCCCCGGCTTGCCGGTGGGTGGTTTTACCTATTCGCAAGGCCTGGAGTGGGCGGTCGA > NC_002947/3251156‑3251304 TAAAACCACCCACCGGCAAGCCGGGGCTGGCCAACTGCAGCAGGCGCAGCAGCGCCAGGTCGCTGTTCATCAACCGGCCAGTACCAGCGCGGCGCCGGCCAACAGGCCACCGCCAAAGGCCTTCTGCAGGCCGCTGTGGCGGC‑‑GCAGCAG < 2:1143642/150‑1TAAAACCACCCACCGGCAAGCCGGGGCTGGCCAACTGCAGCAGGCGCAGCAGCGCCAGGTCGCTGTTCATCAACCGGCCAGTACCAGCGCGGCGCCGGCCAACAGGCCACCGCCAAAGGCCTTCTGCAGGCCGCGGTGGCGGC‑‑GCAGCAG > 2:1682877/1‑150TAAAACCACCCACCGGCAAGCCGGGGCTGGCCAACTGCAGCAGGCGCAGCAGCGCCAGGTCGCTGTTCATCAACCGGCCAGTACCAGCGAGGAGCCGGCCAACAGGCCACCGCCAAAGGCCTTCTGCAGGCCGCTGTGGCGGC‑‑GCAGCAG > 2:2132679/1‑150 CCACCGGCAAGCCGGGGCTGGCCAACTGCAGCAGGCGCAGCAGCGCCAGGTCGCTGTTCATCAACCGGCCAGTACCAGCGCGGCGCCGGCCAACAGGCCACCGCCAAAGGCCTTCTGCAGGCCGCTGTGGCGGC‑‑GCAGCAGG > 1:1364952/1‑142 CCACCGGCAAGCCGGGGCTGGCCAACTGCAGCAGGCGCAGCAGCGCCAGGTCGCTGTTCATCAACCGGCCAGTACCAGCGCGGCGCCGGCCAACAGGCCACCGCCAAAGGCCTTCTGCAGGCCGCTGTGGCGGC‑‑GCAGCAGG < 2:1364952/142‑1 GCCAACTGCAGCAGGCGCAGCAGCGCCAGGTCGCTGTTCATCAACCGGCCAGTACCAGCGCGGCGCCGGCCAACAGGCCACCGCCAAAGGCCTTCTGCAGGCCGCTGTGGCGGC‑‑GCAGCAG > 2:52139/1‑121 GCCAACTGCAGCAGGCGCAGCAGCGCCAGGTCGCTGTTCATCAACCGGCCAGTACCAGCGCGGCGCCGGCCAACAGGCCACCGCCAAAGGCCTTCTGCAGGCCGCTGTGGCGGC‑‑GCAGCAG < 1:52139/121‑1 GCGCAGCAGCGCCAGGTCGCTGTTCATCAACCGGCCAGTACCAGCGCGGCGCCGGCCAACAGGCCACCGCCAAAGGCCTTCTGCAGGCCGCTGTGGCGGC‑‑GCAGCAG < 1:1981654/107‑1 GCGCAGCAGCGCCAGGTCGCTGTTCATCAACCGGCCAGTACCAGCGCGGCGCCGGCCAACAGGCCACCGCCAAAGGCCTTCTGCAGGCCGCTGTGGCGGC‑‑GCAGCAG > 2:1981654/1‑107 ACCGCCAAAGGCCTTCTGCAGGCCGCTGTGGCGGC‑‑GCAGCAGGCCTTTGGCGGTGGCCTGTTGGCCGGCGCCGCGCTGGTACTGGCCGGTTGATGAACAGCGACCTGGCGCTGCTGCGCCTGCTGCAGTTGGCCAGCCCCGGCTTGCCGG < 2:1994913/150‑1 ACCGCCAAAGGCCTTCTGCAGGCCGCTGTGGCGGC‑‑GCAGCAGGCCTTTGGCGGTGGCCTGTTGGCCGGCGCCGCGCTGGTACTGGCCGGTTGATGAACAGCGACCTGGCGCTGCTGCGCCTGCTGCAGTTGGCCAGCCCCGGCTTGCCGG > 1:1994913/1‑150 CCTTCTGCAGGCCGCTGTGGCGGC‑‑GCAGCAGGCCTTTGGCGGTGGCCTGTTGGCCGGCGCCGCGCTGGTACTGGCCGGTTGATGAACAGCGACCTGGCGCTGCTGCGC < 1:173559/108‑1 CCTTCTGCAGGCCGCTGTGGCGGC‑‑GCAGCAGGCCTTTGGCGGTGGCCTGTTGGCCGGCGCCGCGCTGGTACTGGCCGGTTGATGAACAGCGACCTGGCGCTGCTGCGC < 1:173780/108‑1 CCTTCTGCAGGCCGCTGTGGCGGC‑‑GCAGCAGGCCTTTGGCGGTGGCCTGTTGGCCGGCGCCGCGCTGGTACTGGCCGGTTGATGAACAGCGACCTGGCGCTGCTGCGC > 2:173559/1‑108 CCTTCTGCAGGCCGCTGTGGCGGC‑‑GCAGCAGGCCTTTGGCGGTGGCCTGTTGGCCGGCGCCGCGCTGGTACTGGCCGGTTGATGAACAGCGACCTGGCGCTGCTGCGC > 2:173780/1‑108 TGCAGGCCGCTGTGGCGGCCTGCAGAAGGCCTTTGGCGGTGGCCTGTTGGCCGGCGCCGCGCTGGTACTGGCCGGTTGATGAACAGCGACCTGGCGCTGCTGCGCCTGCTGCAGTTGGCCAGCCCCGGCTTGCCGGTGGGTGGTTTTAC > 1:681688/1‑149 TGCAGGCCGCTGTGGCGGCCTGCAGAAGGCCTTTGGCGGTGGCCTGTTGGCCGGCGCCGCGCTGGTACTGGCCGGTTGATGAACAGCGACCTGGCGCTGCTGCGCCTGCTGCAGTTGGCCAGCCCCGGCTTGCCGGTGGGTGGTTTTAC < 2:681688/149‑1 GGCCTTTGGCGGTGGCCTGTTGGCCGGCGCCGCGCTGGTACTGGCCGGTTGATGAACAGCGACCTGGCGCTGCTGCGCCTGCTGCAGTTGGCCAGCCCCGGCTTGCCGGTGGGTGGTTTTAC > 2:1142921/1‑122 GGCCTTTGGCGGTGGCCTGTTGGCCGGCGCCGCGCTGGTACTGGCCGGTTAATGAACAGCGACCTGGCGCTGCTGCGCCTGCTGCAGTTGGCCAGCCCCGGCTTGCCGGTGGGTGGTTTTAC < 1:1142921/122‑1 CCTTTGGCGGTGGCCTGTTGGCCGGCGCCGCGCTGGTACTGGCCGGTTGATGAACAGCGACCTGGCGCTGCTGCGCCTGCTGCAGTTGGCCAGCCCCGGCTTGCCGGTGGGTGGTTTTACCTATTCGCAAGGCCTGGAGTGGGCGGTCGA < 1:1286623/150‑1 CCTTTGGCGGTGGCCTGTTGGCCGGCGCCGCGCTGGTACTGGCCGGTTGATGAAACGCGACCTGGCGCTGCTGCGCCTGCTGCAGTTGGCCAGCCCCGGCTTGCCGGTGGGTGGTTTTACCTATTCGCAAGGCCTGGAGTGGGCGGTCGA < 1:1836097/150‑1 TAAAACCACCCACCGGCAAGCCGGGGCTGGCCAACTGCAGCAGGCGCAGCAGCGCCAGGTCGCTGTTCATCAACCGGCCAGTACCAGCGCGGCGCCGGCCAACAGGCCACCGCCAAAGGCCTTCTGCAGGCCGCTGTGGCGGC‑‑GCAGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3251273‑3251122‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcCTTTGGCGGTGGCCTGTTGGCCGGCGCCGCGCTGGTACTGGCCGGTTGATGAACAGCGACCTGGCGCTGCTGCGCCTGCTGCAGTTGGCCAGCCCCGGCTTGCCGGTGGGTGGTTTTACCTATTCGCAAGGCCTGGAGTGGGCGGTCGA > NC_002947/3251156‑3251304 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |