| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3400640 | 57 (0.640) | 8 (0.100) | 8/234 | NT | 11.8% | intergenic (‑28/+76) | PP_3006/PP_3007 | ECF family RNA polymerase sigma‑70 factor/hypothetical protein |
| ? | NC_002947 | = 3400664 | 65 (0.770) | intergenic (‑52/+52) | PP_3006/PP_3007 | ECF family RNA polymerase sigma‑70 factor/hypothetical protein | |||||
CGCCGGGCAACGCCCAGCAGGCGCGCGCCTTCGTGATCGTAGAGCGCCTGCAGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3400488‑3400640‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaagCCCCCCGGCTGGATGGCCGGGGTACTTGCCTTACACAAGGAAGCCACACACGTTGAACTCGCCGGCCGCCCCCTTCGACTTCCACCGCTGCCTGTTAGCCTGTGCACAGGGTGACCGACGGGCCCTGCAGGCGCTCTACGATCACGAAG < NC_002947/3400664‑3400516 CGCCGGGCAACGCCCAGCAGGCGCGCGCCTTCGTGATCGTAGAGCGCCTGCAGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGC > 1:278064/1‑150 GCCGGGCAACGCCCAGCAGGCGCGCGCCTTCGTGATCGTAGAGCGCCTGCAGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCA > 2:119276/1‑150 CCGGGCAACGCCCAGCAGGCGCGCGCCTTCGTGATCGTAGAGCGCCTGCAGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAA < 1:119276/150‑1 CCGGGCAACGCCCAGCAGGCGCGCGCCTTCGTGATCGTAGAGCGCCTGAAAGGCGCCTTGAAGGCCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAA > 2:1532452/1‑150 CGCGCCTTCGTGATCGTAGAGCGCCTGCAGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCTGGATGGCCGG < 1:1802586/150‑1 GATCGTAGAGCGCCTGCAGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCTGGATGGCCGGGGTACTTGCCT < 1:822519/150‑1 CGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAG < 2:2295107/91‑1 CGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAG > 1:2295107/1‑91 CACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGCCCCCCGGCTGGATGGCCGGGGTAC > 1:1389375/1‑105 CACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCCTGTGTAAGGCAAGCCCCCCGGCTGGATGGCCGGGGTAC < 2:1389375/105‑1 ACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGCCCCCCGGCTGGATGGCCGGGGTACTTGCCTT > 2:1433564/1‑111 ACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGCCCCCCGGCTGGATGGCCGGGGTACTTGCCTT < 1:1433564/111‑1 TCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGCCCCCCGGCTGGATGGCCGGGGTACTT > 1:1691114/1‑81 TCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGCCCCCCGGCTGGATGGCCGGGGTACTT < 2:1691114/81‑1 GCAAGCCCCCCGGCTGGATGGCCGGGGTNNTTGCCTTACACAAGNANGNCACACACGTTGAACTCGCCGGCCGCCCCCTTCGACTTCCACCGCTGCCTGTTAGCCTGTGCACAGGGTGACCGACGGGCCCTGCAGGCGCTCTACGATCAC > 1:1460277/1‑150 GCAAGCCCCCCGGCTGGATGGCCGGGGTACTTGCCTTACACAAGGAAGCCACACACGTTGAACTCGCCGGCCGCCCCCTTCGACTTCCACCGCTGCCTGTTAGCCTGTGCACAGGGTGACCGACGGGCCCTGCAGGCGCTCTACGATCAC > 1:1942810/1‑150 GCCCCCCGGCTGGATGGCCGGGGTACTTGCCTTACACAAGGAAGCCACACACGTTGAACTCGCCGGCCGCCCCCTTCGACTTCCACCGCTGCCTGTTAGCCTGTGCACAGGGTGACCGACGGGCCCTGCAGGCGCTCTACGATCACGAAG < 2:1942810/150‑1 CGCCGGGCAACGCCCAGCAGGCGCGCGCCTTCGTGATCGTAGAGCGCCTGCAGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3400488‑3400640‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaagCCCCCCGGCTGGATGGCCGGGGTACTTGCCTTACACAAGGAAGCCACACACGTTGAACTCGCCGGCCGCCCCCTTCGACTTCCACCGCTGCCTGTTAGCCTGTGCACAGGGTGACCGACGGGCCCTGCAGGCGCTCTACGATCACGAAG < NC_002947/3400664‑3400516 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |