New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 361038878 (0.880)6 (0.070) 5/234 NT 7.5% coding (3339/3396 nt) mcoA Mn(II) copper oxidase A
?NC_002947 = 3610420 74 (0.880)coding (3307/3396 nt) mcoA Mn(II) copper oxidase A

GAACAACGCCAGTACCAGCAGGAATCGCCATGAGCCGGGCATGATGCGGTCCTCGTGGGTTGGCTGATGGGGGCCGCATGGCGGCCCCGCTTTGCACTCACTTGTATGTGACTGGCGCTGTCACCGTCTGGCCCAGCGTCGATTTCACCGTGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3610234‑3610388
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgaccACCACCGGCTTTGGCCCGGCCACGCCAGCGACGGTCACGGTGAAATCGACGCTGGGCCAGACGGTGACAGCGCCAGTCACATACAAGTGAGTGCAAAGCGGGGCCGCCAT‑GCGGCCCCCATCAGCCAACCCACGAGGACCGCATCATGC  <  NC_002947/3610420‑3610272
                                                                                                                                                                                                                                                                                                                 
GAACAACGCCAGTACCAGCAGGAATCGCCATGAGCCGGGCATGATGCGGTCCTCGTGGGTTGGCTGATGGGGGCCGCATGGCGGCCCCGCTTTGCACTCACTTGTATGTGACTGGCGCTGTCACCGTCTGGCCCAGCGTCGATTTCACCG                                                                                                                                                             >  1:1319914/1‑150
 AACAACGCCAGTACCAGCAGGAATCGCCATGAGCCGGGCATGATGCGGTCCTCGTGGGTTGGCTGATGGGGGCCGCATGGCGGCCCCGCTTTGCACTCACTTGTATGTGACTGGCGCTGTCACCGTCTGGCCCAGCGTCGATTTCACCGT                                                                                                                                                            >  1:364862/1‑150
    AACGCCAGTACCAGCAGGAATCGCCATGAGCCGGGCATGATGCGGTCCTCGTGGGTTGGCTGATGGGGGCCGCATGGCGGCCCCGCTTTGCACTCACTTGTATGTGACTGGCGCTGTCACCGTCTGGCCCAGCGTCGATTTCACCGTGAC                                                                                                                                                         >  1:29446/1‑150
    AACGCCAGTACCAGCAGGAATCGCCATGAGCCGGGCATGATGCGGTCCTCGTGGGTTGGCTGATGGGGGCCGCATGGCGGCCCCGCTTTGCACTCACTTGTATGTGACTGGCGCTGTCACCGTCTGGCCCAGCGTCGATTTCACCGTGAC                                                                                                                                                         >  1:52870/1‑150
    AACGCCAGTACCAGCAGGAATCGCCATGAGCCGGGCATGATGCGGTCCTCGTGGGTTGGCTGATGGGGGCCGCATGGCAGCCTCGCCTTGAACTCAGAGGTAGGTGGCGGGCGCTGTCACCGTCTGGCCCAGCGTCGATTTCACCGTGAC                                                                                                                                                         >  1:1250820/1‑150
                                                                    GGGGGCCGCATGGGGACCCCGCTTTGCACTCACTTGTATGTGACTGGCGCTGTCACCGTCTGGCCCAGCGTCGATTTCACCGTGACCACCACCGGCTTTGGCCCGGCCACGCCAGCGACGGTCACG                                                                                                                 <  1:127205/126‑1
                                                                    GGGGGCCGCATGGCGGCCCCGCTTTGCACTCACTTGTATGTGACTGGCGCTGTCACCGTCTGGCCCAGCGTCGATTTCACCGTGACCACCACCGGCTTTGGCCCGGCCACGCCAGCGACGGTCACG                                                                                                                 >  2:127205/1‑126
                                                                        GCCGCATGGCGGCCCCGCTTTGCACTCACTTGTATGTGACTGGCGCTGTCACCGTCTGGCCCAGCGTCGATTTCACCGTGACCACCACCGGCTTTGGCCCGGCCACGCCAGCGACGGTCACG                                                                                                                 <  1:1675612/122‑1
                                                                        GCCGCATGGCGGCCCCGCTTTGCACTCACTTGTATGTGACTGGCGCTGTCACCGTCTGGCCCAGCGTCGATTTCACCGTGACCACCACCGGCTTTGGCCCGGCCACGCCAGCGACGGTCACG                                                                                                                 >  2:1675612/1‑122
                                                                                                       GTATGTGACTGGCGCTGTCACCGTCTGGCCCAGCGTCGATTTCACCGTGACCACCACCGGCTTTGGCCCGGCCACGCCAGCGACGGTCACGGT                                                                                                               <  1:888657/93‑1
                                                                                                       GTATGTGACTGGCGCTGTCACCGTCTGGCCCAGCGTCGATTTCACCGTGACCACCACCGGCTTTGGCCCGGCCACGCCAGCGACGGTCACGGT                                                                                                               >  2:888657/1‑93
                                                                                                                                                    gcTGACCACCACCGGCTTTGGCCCGGCCACGCCAGCGACGGTCACGGTGAAATCGACGCTGGGCCAGACGGTGACAGCGCCAGTCACATACAAGTGAGTGCAAAGCGGGGCCGCATG‑GCGGCCCC                                 >  2:405931/3‑125
                                                                                                                                                         CCACCACCGGCTTTGGCCCGGCCACGCCAGCGACGGTCACGGTGAAATCGACGCTGGGCCAGACGGTGACAGCGCCAGTCACATACAAGTGAGTGCAAAGCGGGGCCGCCAT‑GCGGCCCCCATCAGCCAACCCACGAGGACCGCATCATG   <  1:1248521/150‑1
                                                                                                                                                          CACCACCGGCTTTGGCCCGGCCACGCCAGCGACGGTCACGGTGAAATCGACGCTGGGCCAGACGGTGACAGCGCCAGTCACATACAAGTGAGTGCAAAGCGGGGCCGCCAT‑GCGGCCCCCATCAGCCAACCCACGAGGACCGCATCATGC  <  2:2405175/150‑1
                                                                                                                                                          CACCACCGGCTTTGGCCCGGCCACGCCAGCGACGGTCACGGTGAAATCGACGCTGGGCCAGACGGTGACAGCGCCAGTCACATACAAGTGAGTGCAAAGCGGGGCCG‑CATGGCGGCCCCgct                              <  1:1809191/122‑4
                                                                                                                                                          CACCACCGGCTTTGGCCCGGCCACGCCAGCGACGGTCACGGTGAAATCGACGCTGGGCCAGACGGTGACAGCGCCAGTCACATACAAGTGAGTGCAAAGCGGGGCCG‑CATGGCGGCCCCgct                              >  2:1809191/1‑119
                                                                                                                                                                                                                                                                                                                 
GAACAACGCCAGTACCAGCAGGAATCGCCATGAGCCGGGCATGATGCGGTCCTCGTGGGTTGGCTGATGGGGGCCGCATGGCGGCCCCGCTTTGCACTCACTTGTATGTGACTGGCGCTGTCACCGTCTGGCCCAGCGTCGATTTCACCGTGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3610234‑3610388
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgaccACCACCGGCTTTGGCCCGGCCACGCCAGCGACGGTCACGGTGAAATCGACGCTGGGCCAGACGGTGACAGCGCCAGTCACATACAAGTGAGTGCAAAGCGGGGCCGCCAT‑GCGGCCCCCATCAGCCAACCCACGAGGACCGCATCATGC  <  NC_002947/3610420‑3610272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.