New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3886959	59 (0.670)	13 (0.150)	11/246	NT	16.7%	coding (942/2118 nt)	PP_3430	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	3963919 =	71 (0.800)					coding (129/933 nt)	PP_3493	LysR family transcriptional regulator

GCTGCAGCAGTTCGAGGCTGCCGCCGATACCGGACAGCAAGTTGTTCATTTCATGGCCCATGCCGCCCGCCAACTGGCCCACCACCTCCATACGCTCACTGTTGTGCATCAGCGCCTCTGCCTGACGCGCAGCCTCTTCACGGTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3886814‑3886959 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGGTTCT‑CCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAGCGAAGCTGCCACATTCCACCACCCGGGTGAAGGTACGCATGGCATGC  >  NC_002947/3963919‑3964036                                                                                                                                                                                                                                                                           GCTGCAGCAGTTCGAGGCTGCCGCCGATACCGAACAGCAAGTTGTTCATTTCATGGCCCATGCCGCCCGCCAACTGGCCCACCACCTCCATACGCTCACTGTTGTGCATCAGCGCCTCTGCCTGACGCGCAGCCTCTTCACGGTCTCTGG                                                                                                                     <  1:913057/150‑1                     CCGCCGATACCGGACAGCAAGTTGTTCATTTCATGGCCCATGCCGCCCGCCAACTGGCCCACCACCTCCATACGCTCACTGTGGTGCATCAGCGCCTCTGCCTGACGCGCAGCCTCTTCACGGTCTCTGGTTCT‑CCAGCTCGGCGACGAT                                                                                                >  1:762722/1‑150                         CGATACCGGACAGCAAGTTGTTCATTTCATGGCCCATGCCGCCCGCCAACTGGCCCACCACCTCCATACGCTCACTGTTGTGCATCAGCGCCTCTGCCTGACGCGCAGCCTCTTCACGGTCTCTGGTTCT‑CCAGCTCGGCGACGATGCGC                                                                                            <  2:762722/150‑1                                       AAGTTGTTCATTTCATGGCCCATGCCGCCCGCCAACTGGCCCACCACCTCCATACGCTCACTGTTGTGCATCAGCGCCTCTGCCTGACGCGCAGCCTCTTCACGGTCTCTGGTTCT‑CCAGCTCGGCGACGATGCGCGAAACCTGCGCTGC                                                                              >  1:2353976/1‑150                                                               CCGCCCGCCAACTGGCCCACCACCTCCATACGCTCACTGTTGTGCATCAGCGCCTCTGCCTGACGCGCAGCCTCTTCACGGTCTCTGGTTCT‑CCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGC                                                      <  2:1089392/150‑1                                                                               CCACCACCTCCATACGCTCACTGTTGTGCATCAGCGCCTCTGCCTGACGCGCAGCCTCTTCACGGTCTCTGGTTCT‑CCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAGCGAAGCTGCCA                                      <  2:1423020/150‑1                                                                               CCACCACCTCCATACGCTCACTGTTGTGCATCAGCGCCTCTGCCTGACGCGCAGCCTCTTCACGGTCTCTGGTTCT‑CCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCA                                                                             <  1:1079045/111‑1                                                                               CCACCACCTCCATACGCTCACTGTTGTGCATCAGCGCCTCTGCCTGACGCGCAGCCTCTTCACGGTCTCTGGTTCT‑CCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCA                                                                             >  2:1079045/1‑111                                                                                CACCACCTCCATACGCTCACTGTTGTGCATCAGCGCCTCTGCCTGACGCGCACACTCAACGCTTTCTCT‑GTTCTGTCTGCTCGTCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAGCGAAGCTGCCAC                                     >  1:1499564/1‑150                                                                                              GCTCACTGTTGTGCATCAGCGCCTCTGCCTGACGCGCAGCCTCTTCACGGTCTCTGGTTCT‑CCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAGCGAAGCTGCCACATTCCACCACCCGG                       >  2:1618575/1‑150                                                                                               CTCACTGTTGTGCATCAGCGCCTCTGCCTGACGCGCAGCCTCTTCACGGTCTCTGGTTCT‑CCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAGCGAAGCTGCCACATTCCACCACCCGGG                      >  2:1318788/1‑150                                                                                                        GTGCATCAGCGCCTCTGCCTGACGCGCAGCCTCTTCACGGTCTCTGGTTCT‑CCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAGCGAAGCTGCCACATTCCACCACCCGGGTGAAGGTAC             <  2:1499564/150‑1                                                                                                        GTGCATCAGCGCCTCTGCCTGACGCGCAGCCTCTTCACGGTCTCTGGTTCT‑CCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAGCGAAGCTGCCACATTCCACCACCCGGGTGAAGGTAC             <  2:1951867/150‑1                                                                                                                   CCTCTGCCTGACGCGCAGCCTCTTCACGGTCTCTGGTTCT‑CCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTCGCAGCTGCAGCGAAACCGCGACATTCCACCCCCCGGTTGAAGGGACGCATGGCATGt  <  2:2353976/150‑2                                                                                                                                                                                                                                                                           GCTGCAGCAGTTCGAGGCTGCCGCCGATACCGGACAGCAAGTTGTTCATTTCATGGCCCATGCCGCCCGCCAACTGGCCCACCACCTCCATACGCTCACTGTTGTGCATCAGCGCCTCTGCCTGACGCGCAGCCTCTTCACGGTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3886814‑3886959 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGGTTCT‑CCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAGCGAAGCTGCCACATTCCACCACCCGGGTGAAGGTACGCATGGCATGC  >  NC_002947/3963919‑3964036

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.