New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3947984	30 (0.340)	8 (0.120)	8/190	NT	23.1%	coding (109/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	= 3948013	30 (0.440)					coding (80/1797 nt)	PP_3483	type II secretion system protein

AATGCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3947810‑3947984 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcgcgggcatgcccgctcccacaggATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAAGAACCCAGCAAAAATTTCCGC‑CTACCCCCGCGACCTCCTGGCCCAGGCCCGTCTGCAAGCCACTGACGAGCGCCTGCTCGACTGCCTGGAACGC  <  NC_002947/3948013‑3947865                                                                                                                                                                                                                                                                                                                                       AATGCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCT                                                                                                                                                                                 >  1:2107907/1‑150    GCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCG                                                                                                                                                                              >  2:1042205/1‑150         GTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGC                                                                                                                                                                         >  2:1032585/1‑150            AGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTGCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGTAAATTTTTGCTGGGTTCTTCGCGGGCATG                                                                                                                                                                      >  2:149455/1‑150             GGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGC                                                                                                                                                                     <  2:2036671/150‑1               CCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGC                                                                                                                                                                     <  2:371302/148‑1               CCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGC                                                                                                                                                                     >  1:371302/1‑148                 CAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGCGGTCTTGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGC                                                                                                                                                                 <  1:62429/150‑1                  AGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGGAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCT                                                                                                                                                                <  2:790634/150‑1                  AGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCT                                                                                                                                                                >  2:854810/1‑150                    GCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGACGAAATTTTTGCTCGGTTCTTCGCGTGCATGCCCGCgaa                                                                                                                                                              <  1:1032585/150‑4                      GCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCA                                                                                                                                                            >  2:1039134/1‑150                          GGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGG                                                                                                                                                        >  1:2238139/1‑150                              AAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGG                                                                                                                                                                          <  2:2083115/128‑1                              AAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGG                                                                                                                                                                          >  1:2083115/1‑128                                       GGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGC                                                                                                                                                                     <  1:252294/124‑1                                       GGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGC                                                                                                                                                                     >  2:252294/1‑124                                               GCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCga                                                                                                                                                               >  2:492647/1‑120                                               GCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCga                                                                                                                                                               <  1:492647/122‑3                                               GCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCA                                                                                                                                                            <  2:148890/125‑1                                               GCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGATACTGCGCGGGCATGCCCGCTCCCA                                                                                                                                                            >  1:148890/1‑125                                                              CAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAG                                                                                                                                                         <  1:1643093/113‑1                                                              CAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAG                                                                                                                                                         >  2:1643093/1‑113                                                                    GTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGG                                                                                                              <  1:1039134/150‑1                                                                            GGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGC                                                                                                            >  1:12409/1‑144                                                                            GGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGC                                                                                                            <  2:12409/144‑1                                                                                      AGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGGTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTTATGTACCTGTGGGAGCGGGCATGCCCGCGAAGAACC                                                                                            <  1:784523/150‑1                                                                                                                    GTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTG                                                                                                                     <  1:2154940/95‑1                                                                                                                    GTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTG                                                                                                                     >  2:2154940/1‑95                                                                                                                                              CTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGA                                                                                                                  >  1:1980417/1‑72                                                                                                                                              CTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGA                                                                                                                  <  2:1980417/72‑1                                                                                                                                                      TTCGCGGGCATGCCCGCTCCCACAGGATGTATGCATCCCACAGACCTGTGATGTACCTGTGGGAGCGGGC                                                                                                            <  1:2353145/70‑1                                                                                                                                                      TTCGCGGGCATGCCCGCTCCCACAGGATGTATGCATCCCACAGACCTGTGATGTACCTGTGGGAGCGGGC                                                                                                            >  2:2353145/1‑70                                                                                                                                                      TTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACATACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAAGAACCCGGCAAAAA‑TTCGGCGGGACCCCCGCGACCTCCTGGCCCAGGCCCGTCTGCCAGCCACTGACGA                           >  1:149455/1‑150                                                                                                                                                      TTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAAGAACC                                                                                            <  1:1713550/86‑1                                                                                                                                                      TTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAAGAACC                                                                                            >  2:1713550/1‑86                                                                                                                                                        CGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAAAAACCCAGCAAAAATTTCCGC‑CTACCCCCGCGACCTCCTGGCCCAGGCCCGTCTGCAAGCCACTGACGAGC                         <  1:1107496/150‑1                                                                                                                                                         GCGGGCATCCCCCCTCCCTCAGGTTGTCTCCACCACACAGACCTTTGATGTACCTGTGGAAGCGGGCATGCCCGCGAAGAACCCAGCAAAAATTTCCGC‑CTACCCCCGCGACCTCCTGGCCCAGGCCCGTCTGCAAGCCACTGACGAGCG                        <  1:292829/150‑1                                                                                                                                                                       TCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAAGAACCCAGCAAAAATTTCCGC‑CTACCCCCGCGACCTCCTGGCCCAGGCCCGTCTGCAAGCCACTGACGAGCGCCTGCTCGACTGCC          >  2:2107907/1‑150                                                                                                                                                                         CCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAAGAACCCAGCAAAAATTTCCGC‑CTACCCCCGCGACCTCCTGGCCCAGGCCCGTCTGCAAGCCACTGACGAGCGCCTGCTCGACTGCCTG        >  1:1183470/1‑150                                                                                                                                                                           ACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAAGAACCCAGCAAAAATTTCCGC‑CTACCCCCGCGACCTCCTGGCCCAGGCCCGTCTGCAAGCCACTGACGAGCGCCTGCTCGACTGCCTGGA      >  2:1614762/1‑150                                                                                                                                                                               GATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAAGAACCCAGCAAAAATTTCCGC‑CTACCCCCGCGACCTCCTGGCCCAGGCCCGTCTGCAAGCCACTGACGAGCGCCTGCTCGACTGCCTGGAACGC  >  2:1926819/1‑150                                                                                                                                                                                                                                                                                                                                       AATGCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3947810‑3947984 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcgcgggcatgcccgctcccacaggATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAAGAACCCAGCAAAAATTTCCGC‑CTACCCCCGCGACCTCCTGGCCCAGGCCCGTCTGCAAGCCACTGACGAGCGCCTGCTCGACTGCCTGGAACGC  <  NC_002947/3948013‑3947865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.