New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3947984	30 (0.340)	8 (0.120)	8/190	NT	23.1%	coding (109/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	= 3948013	30 (0.440)					coding (80/1797 nt)	PP_3483	type II secretion system protein

GCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCT  >  NC_002947/3947865‑3948162                                                                                                                                                      |                                                                                                                                                      gCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATc                                                                                                                                                      >  2:1926819‑M2/1‑149 (MQ=255)     tCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgt                                                                                                                                                  >  2:1614762‑M2/1‑145 (MQ=255)       cAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgg                                                                                                                                                >  1:1183470‑M2/1‑143 (MQ=255)         ggCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtggga                                                                                                                                              >  2:2107907‑M2/1‑141 (MQ=255)          cctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGa                                                                                                                                              >  1:2161917‑M1/85‑150 (MQ=255)          cctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGa                                                                                                                                              >  1:1708298‑M1/85‑150 (MQ=255)            tgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGc                                                                                                                                            >  2:1322119‑M1/83‑150 (MQ=255)             gcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTgg                                                                                                                                                <  2:2297833‑M1/64‑1 (MQ=255)             gcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatccaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTgg                                                                                                                                                >  1:2297833‑M1/82‑145 (MQ=255)                       cgcTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTTCCACAGGTACATCAAAGGTCTGTGTGGTGGAGACAAcctgagggaggggggatgcccgc                                                                                                                                <  1:292829‑M2/150‑24 (MQ=255)                        gcTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTTTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcg                                                                                                                               <  1:1107496‑M2/150‑25 (MQ=255)                          tCGTCAGTGGCTGGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTCCCGCCGAA‑TTTTTGCCGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTATGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaa                                                                                                                             >  1:149455‑M2/1‑124 (MQ=255)                                 tGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCg                                                                                                                      <  1:1705173/150‑1 (MQ=255)                                     ttGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCGGTGGTCCACAGGTACATCACAGGTATGTGGACTGAATACATACTGTGGGGGCGGGCGTGCCCGCGAAGACGTCGGTgg                                                                                                                  >  2:2268539/1‑149 (MQ=255)                                     ttGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGTTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTAGTTGc                                                                                                                  >  2:1211328/1‑150 (MQ=255)                                              ggCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTTTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGc                                                                                                         <  2:1107496/150‑1 (MQ=255)                                                       cAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCgg                                                                                                <  1:1088142/150‑1 (MQ=255)                                                           cggTCGCGGGGGTAG‑GCGCAAATTTTTGCTGCGTTCTTCGCGGGCATGCCCGTCCCCACAGGTACATCACAGGTCCGTGGGCTTCATCCATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGtt                                                                                            <  2:292829/149‑1 (MQ=255)                                                           aggTGGCGCGGGTGG‑GCGGAAATGTTTGCTGGGTTCTTCGCGGGGATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGACTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGtt                                                                                            <  1:2268539/150‑1 (MQ=39)                                                                gcgGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTc                                                                                                                       >  2:950823/1‑118 (MQ=255)                                                                gcgGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTc                                                                                                                       <  1:950823/118‑1 (MQ=255)                                                                   ggggTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCCCAGGTACATCACAGGTCTGTGGGCTGCATACCTCCTGTGGTAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGaa                                                                                    <  1:854810/150‑1 (MQ=255)                                                                              gAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCCCAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGc                                                                          <  1:1758500/150‑1 (MQ=255)                                                                                     ttGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACTGGGAAATTACAGGTCTGTGGGCTGCATACATCCTGTGGCAGCGGGGATGCGTGCGAAGACGTCGGTGCGGGCTTGGCAGATTCCGGGGTTGGCAGGGATGCGTCTGGCATAGCCt                                                                   >  2:1004663/1‑150 (MQ=255)                                                                                        cTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGc                                                                          <  1:2128151/140‑1 (MQ=255)                                                                                        cTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGc                                                                          >  2:2128151/1‑140 (MQ=255)                                                                                         tGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCGGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGa                                                               >  1:1981089/1‑150 (MQ=255)                                                                                         tGGGTTCTTCGCGGGCATGCCCGCGCCCACAGCTACGGCGCCGGTGGCTGGGCCGCATACATCCTGCTGGAGCGCGCATGCGCGGGCCGCGGTGGTTTCAGGCTTTGCCGATTCCAGCGTTGCATCGAATGCTTGTGGCATCGCCTGCGa                                                               >  2:32025/1‑150 (MQ=255)                                                                                           ggTTCTTCGCGGGCATGCCCGCTGGCCAAGGTACATCACAGGTCTGTGGGCTGCTTACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACt                                                             <  1:1211328/150‑1 (MQ=255)                                                                                           ggTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaa                                                                                                                             <  1:1713550‑M2/86‑27 (MQ=255)                                                                                           ggTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaa                                                                                                                             >  2:1713550‑M2/1‑60 (MQ=255)                                                                                           ggTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATAACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaccccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccact                                                             <  1:784523‑M2/150‑91 (MQ=255)                                                                                              TCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGaa                                                                                    >  1:1619932‑M1/1‑124 (MQ=255)                                                                                              TCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGaa                                                                                    <  2:1619932‑M1/124‑1 (MQ=255)                                                                                                 gagcgGGCATGCCCGCTCCCACAGGGACGTCACAGGTCGGTGGGCCGCATACATCCTGAGGGAGCGGGCAAGCCCGCGAAGACGTCGGTGCAGGCATTGCAGAGTCCGGGGTTGCATCGAATGCTTCTGGCAGGGCCTGCGCCTCCGCTc                                                       >  1:1659109/3‑150 (MQ=255)                                                                                                   GCGGGCATGCCCGCTCCCACCGGTACATCACAGGTCTGTGGGCTGCAGACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAg                                                     <  2:1620818‑M1/150‑1 (MQ=255)                                                                                                       GCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGgc                                                 <  1:2282877‑M1/150‑1 (MQ=255)                                                                                                         ATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGgcgc                                               <  2:1413149‑M1/150‑1 (MQ=255)                                                                                                           gCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccactgacgagcgcc                                                   <  2:12409‑M2/144‑101 (MQ=255)                                                                                                           gCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccactgacgagcgcc                                                   >  1:12409‑M2/1‑44 (MQ=255)                                                                                                           gCCCGCTCCCACAGGTACATCACAGGTCTGTGGGATGCATACATcctgtgggagcgggcatgcccgcgaa                                                                                                                             <  1:2353145‑M2/70‑27 (MQ=255)                                                                                                           gCCCGCTCCCACAGGTACATCACAGGTCTGTGGGATGCATACATcctgtgggagcgggcatgcccgcgaa                                                                                                                             >  2:2353145‑M2/1‑44 (MQ=255)                                                                                                            CCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTc                                            <  2:2226564‑M1/150‑1 (MQ=255)                                                                                                             ccGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccactgacgagcgcctgctcgac                                           <  1:1039134‑M2/150‑109 (MQ=255)                                                                                                             CCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGGATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCGTGGCCTGCGACTCCGCTCAGGGGCGCGTCg                                           <  2:1563565‑M1/150‑1 (MQ=255)                                                                                                             CCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGc                                                                 <  1:730763‑M1/128‑1 (MQ=255)                                                                                                             CCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGc                                                                 >  2:730763‑M1/1‑128 (MQ=255)                                                                                                             CCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCg                                           <  1:690182‑M1/150‑1 (MQ=255)                                                                                                                 tCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaacccag                                                                                                                     <  2:1980417‑M2/72‑35 (MQ=255)                                                                                                                 tCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaacccag                                                                                                                     >  1:1980417‑M2/1‑38 (MQ=255)                                                                                                                 TCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCgg                                                                                                >  1:1051468‑M1/1‑93 (MQ=255)                                                                                                                 TCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCgg                                                                                                <  2:1051468‑M1/93‑1 (MQ=255)                                                                                                                    cacaGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgac                                                                                           <  1:2154940‑M2/95‑61 (MQ=255)                                                                                                                    cacaGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaacccagcaaaaatttccgcctacccccgcgac                                                                                           >  2:2154940‑M2/1‑35 (MQ=255)                                                                                                                    CACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggctg                                    <  2:1585153‑M1/150‑1 (MQ=255)                                                                                                                     ACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAAt                                                                                   <  2:514201‑M1/102‑1 (MQ=255)                                                                                                                     ACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAAt                                                                                   >  1:514201‑M1/1‑102 (MQ=255)                                                                                                                               cacaGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAgg                         >  2:1563589/1‑150 (MQ=255)                                                                                                                                    gTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATc                                                                                       >  1:727444/1‑83 (MQ=255)                                                                                                                                    gTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATc                                                                                       <  2:727444/83‑1 (MQ=255)                                                                                                                                    gTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGc                    <  1:2226564/150‑1 (MQ=255)                                                                                                                                       tgtgGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAgg                                                    <  1:746039/115‑1 (MQ=255)                                                                                                                                       tgtgGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAgg                                                    >  2:1940598/1‑115 (MQ=255)                                                                                                                                       tgtgGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAgg                                                    >  2:746039/1‑115 (MQ=255)                                                                                                                                       tgtgGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAgg                                                    <  1:1940598/115‑1 (MQ=255)                                                                                                                                               gCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTa         >  1:2386312/1‑150 (MQ=255)                                                                                                                                                cATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTc                                            <  1:406140/114‑1 (MQ=255)                                                                                                                                                cATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTc                                            >  2:406140/1‑114 (MQ=255)                                                                                                                                                cATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTAt        >  2:1361474/1‑150 (MQ=255)                                                                                                                                                 aTACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGGGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTAtt       >  1:872358/1‑150 (MQ=255)                                                                                                                                                 aTACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTAtt       >  1:1300991/1‑150 (MQ=255)                                                                                                                                                 aTACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTAtt       >  2:2397619/1‑150 (MQ=255)                                                                                                                                                   aCATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTcc     >  2:1696988/1‑150 (MQ=255)                                                                                                                                                      tCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggctgg                                   >  2:1338487/1‑117 (MQ=255)                                                                                                                                                      tCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggctgg                                   <  1:1338487/117‑1 (MQ=255)                                                                                                                                                      tCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCt  >  1:911472/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                      GCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCT  >  NC_002947/3947865‑3948162

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.