| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4541345 = | 75 (0.850) | 8 (0.090) | 6/236 | NT | 9.6% | coding (18/1503 nt) | nhaB | Na(+)/H(+) antiporter NhaB |
| ? | NC_002947 | 4541382 = | 78 (0.920) | coding (55/1503 nt) | nhaB | Na(+)/H(+) antiporter NhaB | |||||
CCAGGGTGAAGATGAATTCGAGCACCAGTGCCCAGCCGGTCGCAACCGGGCCAATGGTTACCAACAACAGCGGGTTGAGCACCAAAAACAGGCAGATGACCACCTTGTACCAAATCGGCGACTTGCCCAGAAAACCGTGGGCGAGGGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4541496‑4541345‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCACTGGTGCTCGAATTCATCTTCACCCTGGCC > NC_002947/4541382‑4541498 ggAGGGTGAAGATGAATTCGAGCATCAGTGCGCAGCCGGTCGCAACCGGGCCAAGGGTTACCAACAACAGCGGGTTGAGCACCAAAAACAGGCAGATGACCACCTTGTACCAAATCGGCGACTTGCCCAGAAAACCGTGGGCGAGGGCGC < 2:249109/148‑1 CAGGGTGAAGATGAATTCGAGCACCAGTGCCCAGCCGGTCGCAACCGGGCCAATGGTTACCAACAACAGCGGGTTGAGCACCAAAAACAGGCAGATGACCACCTTGTACCAAATCGGCGACTTGCCCAGAAAACCGTGGGCGAGGGCGCC > 1:1782911/1‑150 CCAAATCGGCGACTTGCCCAGAAAACCGTGGGCGAGGGCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCACTG < 1:2038377/133‑1 CCAAATCGGCGACTTGCCCAGAAAACCGTGGGCGAGGGCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCACTG > 2:2038377/1‑133 AATCGGCGACTTGCCCAGAAAACCGTGGGCGAGGGCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCACTGGTGCTCGAATTCATCTTCAC > 1:2250541/1‑150 GCGACTTGCCCAGAAAACCGTGGGCGAGGGCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTATTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCACTGGTGCTCGAAT > 1:2204868/1‑135 GCGACTTGCCCAGAAAACCGTGGGCGAGGGCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTATTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCACTGGTGCTCGAAT < 2:2204868/135‑1 GACTTGCCCAGAAAACCGTGGGCGAGGGCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCACTGGTGCTCGAATTCATCTTCACCCTGGCC > 1:1760189/1‑150 GACTTGCCCAGAAAACCGTGGGCGAGGGCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCACTG > 1:907672/1‑123 GACTTGCCCAGAAAACCGTGGGCGAGGGCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCACTG < 2:907672/123‑1 CCAGGGTGAAGATGAATTCGAGCACCAGTGCCCAGCCGGTCGCAACCGGGCCAATGGTTACCAACAACAGCGGGTTGAGCACCAAAAACAGGCAGATGACCACCTTGTACCAAATCGGCGACTTGCCCAGAAAACCGTGGGCGAGGGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4541496‑4541345‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCACTGGTGCTCGAATTCATCTTCACCCTGGCC > NC_002947/4541382‑4541498 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |