New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4583538	76 (0.860)	6 (0.080)	5/206	NT	7.8%	intergenic (‑67/+104)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
	?	NC_002947	= 4583599	79 (1.070)					intergenic (‑128/+43)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase

TCGAGTCGAAGAACGACTTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4583372‑4583538 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccccgtaggagcgggtttaTCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAGCTCGGATGTCTGTGCATGCAATTGAAAGGAGTCGCACATGGCCAAGCGTTCCCG  <  NC_002947/4583599‑4583455                                                                                                                                                                                                                                                                                                                          TCGAGTCGAAGAACGACTTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCC                                                                                                                                                                    <  1:644456/150‑1      TCGAAGAACGACTTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTA                                                                                                                                                               >  2:2260166/1‑150        GAAGAACGACTTGATGTGCAGCTGGTAGATGACGGCGTCCGTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGAGCCCCCGTAGG                                                                                                                                                             >  1:2298451/1‑150          AGAACGACTTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAG                                                                                                                                                           <  2:2056625/150‑1           GAACGACTTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGC                                                                                                                                                          >  2:2004825/1‑150           GAACGACTTGATGTGCAGCTGGTAGATGACGGCGTACTTGTCCCACAGCAGGTCGTCGATGAAGGCGGCCGGGCTGGAACGCGTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGC                                                                                                                                                          >  2:2080918/1‑150           GAACGACTTGATGTGCAGCTCGTAGATGATGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGC                                                                                                                                                          <  2:170885/150‑1              CGACTTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGG                                                                                                                                                       >  2:897299/1‑150               GACTTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGT                                                                                                                                                      <  2:1990199/150‑1                ACTTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTT                                                                                                                                                     >  1:468354/1‑150                 CTTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTT                                                                                                                                                    >  1:100317/1‑150                          CAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC                                                                                                                                                                  >  1:1185430/1‑127                          CAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC                                                                                                                                                                  <  2:1185430/127‑1                                    ATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGG                                                                                                                                                        <  1:1350525/127‑1                                    ATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGG                                                                                                                                                        >  2:1350525/1‑127                                                                           GCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCG                                                                                          <  2:2192319/150‑1                                                                                  GGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGACCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAA                                                                                   <  2:576/150‑1                                                                                                              CTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGG                                                                                       <  2:923497/118‑1                                                                                                              CTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGG                                                                                       >  1:923497/1‑118                                                                                                               TTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGG                                                                                       <  2:1508637/117‑1                                                                                                               TTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGG                                                                                       >  1:1508637/1‑117                                                                                                                                                 GATCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGG                                                                                       >  2:1839162/1‑83                                                                                                                                                 GATCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGG                                                                                       <  1:1839162/83‑1                                                                                                                                                    CCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAGCTCGGATGTCTGTGCATGCAATTGAAAGGAGTCGCACAT                 >  2:1616588/1‑150                                                                                                                                                       CCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAGCTCGGATGTCTGTGCATGCAATTGAAAGGAGTCGCACATGGC              >  1:1835940/1‑150                                                                                                                                                          TAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAGCTCGGATGTCTGTGCATGCAATTGAAAGGAGTCGCACATGGCCAA           >  2:859559/1‑150                                                                                                                                                               GCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAGCTCGGATGTCTGTGCATGCAATTGAAAGGAGTCGCACATGGCCAAGCGTT      <  1:2079731/150‑1                                                                                                                                                               GCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAGCTCGGATGTCTGTGCATGCAATTGAAAGGAGTCGCACATGGCCAAGCGTT      >  1:1584332/1‑150                                                                                                                                                               GCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAGCTCGGATGTCTGTGCAT                                       >  1:2336358/1‑117                                                                                                                                                               GCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAGCTCGGATGTCTGTGCAT                                       <  2:2336358/117‑1                                                                                                                                                                CGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAGCTCGGATGTCTGTGCATGCAATTGAAAGGAGTCGCACATGGCCAAGCGTTC     <  2:1111199/150‑1                                                                                                                                                                 GGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAGCTCGGATGTCTGTGCATGCAATTGAAAGGAGTCGCACATGGCCAAGCGTTCC    <  2:1835940/150‑1                                                                                                                                                                   GTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAGCTCGGATGTCTGTGCATGCAATTGAAAGGAGTCGCACATGGCCAAGCGTTCCCG  >  2:756000/1‑150                                                                                                                                                                   GTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAGCTCGGATGTCTGTGCATGCAATTGAAAGGAGTCGCACATGGCCAAGCGTTCCCG  >  2:772480/1‑150                                                                                                                                                                                                                                                                                                                          TCGAGTCGAAGAACGACTTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4583372‑4583538 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccccgtaggagcgggtttaTCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAGCTCGGATGTCTGTGCATGCAATTGAAAGGAGTCGCACATGGCCAAGCGTTCCCG  <  NC_002947/4583599‑4583455

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.