New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4773349 = | 74 (0.840) | 7 (0.080) | 6/236 | NT | 8.0% | coding (5963/10413 nt) | pvdD | non‑ribosomal peptide synthetase |
? | NC_002947 | 4773394 = | 89 (1.050) | coding (5918/10413 nt) | pvdD | non‑ribosomal peptide synthetase |
GCACTGGCGACCTGGCGCGCTATCGCCCGGACGGTGTGATCGATTACGCCGGGCGTATCGACCACCAGGTAAAAATTCGCGGCCTGCGTATCGAGCTGGGTGAGATCGAAGCACGACTGGCCGAGCACGCCCAAGTGCGCGAGGCAGTGGTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4773502‑4773349 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgctTCGATCTCACCCAGCTCGATACGCAGGCCGCGAATTTTTACCTGGTGGTCGATACGCCCGGCGTAATCGATCACACCGTCCGGGCGATAGCGCGCCAGGTCGCCAGTGCGGTACAGACGACCGCCCTGCTCATCGAACGGATCGGGCAC > NC_002947/4773394‑4773542 GCACTGGCGACCTGGCGCGCTATCGCCCGGACGGTGTGATCGATTACGCCGGGCGTATCGACCACCAGGTAAAAATTCGCGGCCTGCGTATCGAGCTGGGTGAGATCGAAGCACGACTGGCCGAGCACGCCCAAGTGCGCGAGGCAGTGG > 2:1039652/1‑150 GAAGCACGACTGGCCGAGCACGCCCAAGTGCGCGAGGCAGTGGTGCTTCGATCTCACCCAGCTCGATACGCAGGCCGCGAATTTTTACCTGGTGGTCGATACGCCCGGCGTAATCGATCACACCGTCCGGGCGATAGCGCGCCAGGTCGC > 2:652934/1‑150 GAAGCACGACTGGCCGAGCACGCCCAAGTGCGCGAGGCAGTGGTGCTTCGATCTCACCCAGCTCGATACGCAGGCCGCGAATTTTTACCTGGTGGTCGATACGCCCGGCGTAATCGAT > 1:125352/1‑118 GAAGCACGACTGGCCGAGCACGCCCAAGTGCGCGAGGCAGTGGTGCTTCGATCTCACCCAGCTCGATACGCAGGCCGCGAATTTTTACCTGGTGGTCGATACGCCCGGCGTAATCGAT < 2:125352/118‑1 CACGACTGGCCGAGCACGCCCAAGTGCGCGAGGCAGTGGTGCTTCGATCTCACCCAGCTCGATACGCAGGCCGCGAATTTTTACCTGGTGGTCGATACGCCCGGCGTAATCGATCACACCGTCCGGGCGATAGCGCGCCAGGTCGCCAGT > 1:2073933/1‑150 ACGACTGGCCGAGCACGCCCAAGTGCGCGAGGCAGTGGTGCTTCGATCTCACCCAGCTCGATACGCAGGCCGCGAATTTTTACCTGGTGGTCGATACGCCCGGCGTAATCGATCACACCGTCCGGGCGATAGCGCGCCAGGTCGCCAGTG > 1:83014/1‑150 GAGCACGCCCAAGTGCGCGAGGCAGTGGTGCTTCGATCTCACCCAGCNCGATACGCAGGCCGCGAATTTTTACCTGGTGGTCGATACGCCCGGCGTAATCGATCACACCGTCCGGGCGATAGCGCTCCAGGTCGCCAGTGCGGGACAAAC > 1:942909/1‑150 AGGCAGTGGTGCTTCGATCTCACCCAGCTCGATACGCAGGCCGCGAATTTTTACCTGGTGGTCGATACGCCCGGCGTAATCGATCACACCGTCCGGGCGATAGCGCGCCAGGTCGCCAGTGCGGTACAGACGACCGCCCTGCTCATCGAA < 2:83014/150‑1 TGCTTCGATCTCACCCAGCTCGATACGCAGGCCGCGAATTTTTACCTGGTGGTCGATACGCCCGGCGTAATCGATCACACCGTCCGGGCGATAGCGCGCCAGGTCGCCAGTGCGGTACAGACGACCGCCCTGCTCATCGAACGGATCGGG < 2:2073933/150‑1 TGCTTCGATCTCACCCAGCTCGATACGCAGGCCGCGAATTTTTACCTGGTGGTCGATACGCCCGGCGTAATCGATCACACCGTCCGGGCGATAGCGCGCCAGGTCGCCAGTGCGGTACAGACGACCGCCCTGC < 1:670737/133‑1 TGCTTCGATCTCACCCAGCTCGATACGCAGGCCGCGAATTTTTACCTGGTGGTCGATACGCCCGGCGTAATCGATCACACCGTCCGGGCGATAGCGCGCCAGGTCGCCAGTGCGGTACAGACGACCGCCCTGC > 2:670737/1‑133 TGCTTCGATCTCACCCAGCTCGATACGCAGGCCGCGAATTTTTACCTGGTGGTCGATACGCCCGGCGTAATCGATCACACCGTCAAGACAACGAAGAACCTGGTCGCCAGTGCGGTACAGACGACCGCCCTGCTCATCGAACGGATCGGG > 2:2132620/1‑150 TTCGATCTCACCCAGCTCGATACGCAGGCCGCGAATTTTTACCTGGTGGTCGATACGCCCGGCGTAATCGATCACACCGTCCGGGCGATAGCGCGCCAGGTCGCCAGTGCGGTACAGACGACCGCCCTGCTCATCGACCGGATCGGGCAC > 2:385634/1‑150 GCACTGGCGACCTGGCGCGCTATCGCCCGGACGGTGTGATCGATTACGCCGGGCGTATCGACCACCAGGTAAAAATTCGCGGCCTGCGTATCGAGCTGGGTGAGATCGAAGCACGACTGGCCGAGCACGCCCAAGTGCGCGAGGCAGTGGTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4773502‑4773349 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgctTCGATCTCACCCAGCTCGATACGCAGGCCGCGAATTTTTACCTGGTGGTCGATACGCCCGGCGTAATCGATCACACCGTCCGGGCGATAGCGCGCCAGGTCGCCAGTGCGGTACAGACGACCGCCCTGCTCATCGAACGGATCGGGCAC > NC_002947/4773394‑4773542 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |