| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4946641 = | 94 (1.060) | 10 (0.120) | 9/234 | NT | 10.0% | coding (764/777 nt) | fliR | flagellar biosynthetic protein FliR |
| ? | NC_002947 | 4946676 = | 91 (1.080) | coding (729/777 nt) | fliR | flagellar biosynthetic protein FliR | |||||
TGACCCGCGCCGCGCCGCAGCTGAACATTTTCTCCATCGGCTTCCCGCTGACCTTGGTCATGGGCATGTTCATCTTCTGGGTCGGCCTGGCCGATGTCTTGTCCCACTATCAGGCATTGGCCAGCGAAACGCTGCAATGGCTGCG‑TGAGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4946794‑4946641‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggcCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTCATTACGCCAAAGGCAATGTTCACCACCAGC > NC_002947/4946676‑4946823 TGACCCGCGCCGCGCCGCAGCTGAACATTTTCTCCATCGGCTTCCCGCTGACCTTGGTCATGGGCATGTTCATCTTCTGGGTCGGCCTGGCCGATGTCTTGTCCCACTATCAGGCATTGGCCAGCGAAACGCTGCAATGGCTGCG‑TGAGC < 1:1755044/150‑1 GACCCGCGCCGCGCCGCAGCTGAACATTTTCTCCATCGGCTTCCCGCTGACCTTGGTCATGGGCATGTTCATCTTCTGGGTCGGCCTGGCCGATGTCTTGTCCCACTATCAGGCATTGGCCAGCGAAACGCTGCAATGGCTGCG‑TGAGCT > 1:640843/1‑150 ACCCGCGCCGCGCCGCAGCTGAACATTTTCTCCATCGGCTTCCCGCTGACCTTGGTCATGGGCATGTTCATCTTCTGGGTCGGCCTGGCCGATGTCTTGTCCCACTATCAGGCATTGGCCAGCGAAACGCTGCAATGGCTGCG‑TGAGCTG < 1:2116495/150‑1 CCGCGCCGCGCCGCAGCTGAACATTTTCTCCATCGGCTTCCCGCTGACCTTGGTCATGGGCATGTTCATCTTCTGGGTCGGCCTGGCCGATGTCTTGTCCCACTATCAGGCATTGGCCAGCGAAACGCTGCAATGGCTGCG‑TGAGCTGGC > 2:1322287/1‑150 CCTTGGTCATGGGCATGTTCATCTTCTGGGTCGGCCTGGCCGATGTCTTGTCCCACTATCAGGCATTGGCCAGCGAAACGCTGCAATGGCTGCG‑TGAGCTGGC > 2:1584397/1‑103 CCTTGGTCATGGGCATGTTCATCTTCTGGGTCGGCCTGGCCGATGTCTTGTCCCACTATCAGGCATTGGCCAGCGAAACGCTGCAATGGCTGCG‑TGAGCTGGC < 1:1584397/103‑1 TCATCTTCTGGGTCGGCCTGGCCGATGTCTTGTCCCACTATCAGGCATTGGCCAGCGAAACGCTGCAATGGCTGCG‑TGAGCTGG < 1:1112554/84‑1 TCATCTTCTGGGTCGGCCTGGCCGATGTCTTGTCCCACTATCAGGCATTGGCCAGCGAAACGCTGCAATGGCTGCG‑TGAGCTGG > 2:1112554/1‑84 TTGTCCCACTATCAGGCATTGGCCAGCGAAACGCTGCAATGGCTGCG‑TGAGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGT > 2:1092383/1‑125 TTGTCCCACTATCAGGCATTGGCCAGCGAAACGCTGCAATGGCTGCG‑TGAGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGT < 1:1092383/125‑1 AGGCATTGGCCAGCGAAACGCTGCAATGGCTGCG‑TGAGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCG > 2:1155671/1‑150 CATTGGCCAGCGAAACGCTGCAATGGCTGCG‑TGAGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGC > 1:2190602/1‑140 CATTGGCCAGCGAAACGCTGCAATGGCTGCG‑TGAGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGC < 2:2190602/140‑1 ATTGGCCAGCGAAACGCTGCAATGGCTGCG‑TGAGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGC > 2:1180787/1‑150 GCGAAACGCTGCAATGGCTGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTC > 1:1391811/1‑150 GCGAAACGCTGCAATGGCTGCG‑TGAGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTCA > 1:485402/1‑150 GCGAAACGCTGCAATGGCTGCG‑TGAGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTCA < 1:1180787/150‑1 CAATGGCTGCG‑TGAGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTCATTACGCCAAAG < 1:1155671/150‑1 TGAGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTCATTACGCCAAAGGCAATGTTCAC < 2:485402/150‑1 TGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTCATTACGCCAAAGGCAATGTTCACCA < 1:2081194/147‑1 TGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCAGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTCATTACGCCAAAGGCAATGTTCACCA > 2:2081194/1‑147 GCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTCATTACGCCAAAGGCAATGTTCACCACCAGC > 2:1500375/1‑150 CCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTCATTACGCCAAAGGCAATGTT > 1:2163126/1‑139 CCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTCATTACGCCAAAGGCAATGTT < 2:2163126/139‑1 TGACCCGCGCCGCGCCGCAGCTGAACATTTTCTCCATCGGCTTCCCGCTGACCTTGGTCATGGGCATGTTCATCTTCTGGGTCGGCCTGGCCGATGTCTTGTCCCACTATCAGGCATTGGCCAGCGAAACGCTGCAATGGCTGCG‑TGAGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4946794‑4946641‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggcCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTCATTACGCCAAAGGCAATGTTCACCACCAGC > NC_002947/4946676‑4946823 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |