New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 4946641 =94 (1.060)10 (0.120) 9/234 NT 10.0% coding (764/777 nt) fliR flagellar biosynthetic protein FliR
?NC_002947 4946676 = 91 (1.080)coding (729/777 nt) fliR flagellar biosynthetic protein FliR

Only 100 of 126 total aligned reads displayed.

CTTGGAGCGGGCGACCTCGCCCTTCTCGCGGGCGTCGCGCTTGCGCTTTTCGGTGGGGTCTTCTGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTCATTACGCCAAAGGCAATGTTCACCACCAGC  >  NC_002947/4946530‑4946823
                                                                                                                                                  |                                                                                                                                                   
gccgcgccgcagctgaacattttctccatcggcttcccgctgaccttggtcatgggcatgttcatcttctgggtcggcctggccgatgtcttgtcccactatcaggcattgGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAAt                                                                                                                                                  >  2:1180787‑M1/112‑150 (MQ=255)
    gAGCGGGCGACCTCGCCCTTCTCGCGGGCGTCGCGCTTGCGCTTTTCGGTGGGGTCTTCTGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCt                                                                                                                                              <  2:2353761/150‑1 (MQ=255)
    gAGCGGGCGACCTCGCCCTTCTCGCGGGCGTCGCGCTTGCGCTTTTCGGTGGGGTCTTCTGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAACGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCt                                                                                                                                              <  1:61286/150‑1 (MQ=255)
    cgccgcagctgaacattttctccatcggcttcccgctgaccttggtcatgggcatgttcatcttctgggtcggcctggccgatgtcttgtcccactatcaggcattgGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCt                                                                                                                                              >  2:1155671‑M1/108‑150 (MQ=255)
      gCGGGCGACCTCGCCCTTCTCGCGGGCGTCGCGCTTGCGCTTTTCGGTGGGGTCTTCTGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGa                                                                                                                                            >  1:1382087/1‑150 (MQ=255)
        gggCGACCTCGCCCTTCTCGCGGGCGTCGCGCTTGCGCTTTTCGGTGGGGTCTTCTGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCTCGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATa                                                                                                                                          <  2:1392282/150‑1 (MQ=255)
          gCGACCTCGCCCTTCTCGCGGGCGTCGCGCTTGCGCTTTTCGGTGGGGTCTTCTGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGt                                                                                                                                        >  1:888596/1‑150 (MQ=255)
           gctgaacattttctccatcggcttcccgctgaccttggtcatgggcatgttcatcttctgggtcggcctggccgatgtcttgtcccactatcaggcattgGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATg                                                                                                                                                 >  1:2190602‑M1/101‑140 (MQ=255)
           gctgaacattttctccatcggcttcccgctgaccttggtcatgggcatgttcatcttctgggtcggcctggccgatgtcttgtcccactatcaggcattgGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATg                                                                                                                                                 <  2:2190602‑M1/40‑1 (MQ=255)
            gACCTCGCCCTTCTCGCGGGCGTCGCGCTTGCGCTTTTCGGTGGGGTCTTCTGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTgg                                                                                                                                      <  1:117573/150‑1 (MQ=255)
                 cGCCCTTCTCGCGGGCGTCGCGCTTGCGCTTTTCGGTGGGGTCTTCTGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACaa                                                                                                                                 <  2:2289134/150‑1 (MQ=255)
                 cGCCCTTCTCGCGGGCGTCGCGCTTGCGCTTTTCGGTGGGGTCTTCTGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACaa                                                                                                                                 <  2:1173635/150‑1 (MQ=255)
                  gCCCTTCTCGCGGGCGTCGCGCTTGCGCTTTTCGGTGGGGTCTTCTGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAg                                                                                                                                >  2:1921183/1‑150 (MQ=255)
                        ctcGCGGGCGTCGCGCTTGCGCTTTACGGCGGGGACTGCTGGCTTTTCCTTGCCGGGCTCGCTTGCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCg                                                                                                                          <  2:266691/150‑1 (MQ=255)
                           gcgGGCGTCGCGCTTGCGCTTTTCGGTGGGGTCTTCTGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGcc                                                                                                                       >  1:640930/1‑150 (MQ=255)
                            cgGGCGTCGCGCTTGCGCTTTTCGGTGGGGTCTTCTGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCTTGCCCTCGCCAGCTTACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCa                                                                                                                      <  1:294864/150‑1 (MQ=255)
                            cgGGCGTCGCGCTTGCGCTTTTCGGTGGGGTCTTCTGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCa                                                                                                                      <  2:1699223/150‑1 (MQ=255)
                             gggCGTCGCGCTTGCGCTTTTCGGTGGGGTCTTCTGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAg                                                                                                                     <  2:640930/150‑1 (MQ=255)
                               gCGTCGCGCTTGCGCTTTTCGGTGGGGTCTTCTGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGc                                                                                                                   <  1:1146171/150‑1 (MQ=255)
                                         tgcgcttTTCGGTGGGGTCTTCTGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCagaa                                                                                                         <  1:2207383/150‑1 (MQ=255)
                                         tgcgcttTTCGGTGGGGTCTTCTGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCagaa                                                                                                         <  1:113408/150‑1 (MQ=255)
                                          accttggtcatgggcatgttcatcttctgggtcggcctggccgatgtcttgtcccactatcaggcattgGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACaa                                                                                                                                 >  2:1092383‑M1/70‑125 (MQ=255)
                                          accttggtcatgggcatgttcatcttctgggtcggcctggccgatgtcttgtcccactatcaggcattgGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACaa                                                                                                                                 <  1:1092383‑M1/56‑1 (MQ=255)
                                            gcttTTCGGTGGGGTCTTCTGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGAt                                                                                                      <  1:184960/150‑1 (MQ=255)
                                                       gggTCTTCTGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTgg                                                                                                                                      >  2:396206/1‑107 (MQ=255)
                                                       gggTCTTCTGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTgg                                                                                                                                      <  1:396206/107‑1 (MQ=255)
                                                       gggTCTTCTGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCa                                                                                           <  1:1924683/150‑1 (MQ=255)
                                                         gTCTTCTGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCt                                                                                                                                              <  2:1747029/97‑1 (MQ=255)
                                                         gTCTTCTGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCt                                                                                                                                              >  1:1747029/1‑97 (MQ=255)
                                                              ctGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTgg                                                                                                                                      <  2:1512482/100‑1 (MQ=255)
                                                              ctGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTgg                                                                                                                                      >  1:1512482/1‑100 (MQ=255)
                                                              ctGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCaa                                                                                    >  1:1887644/1‑150 (MQ=255)
                                                               tGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAg                                                                                   <  1:2017851/150‑1 (MQ=255)
                                                               tGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAg                                                                                   >  1:1340973/1‑150 (MQ=255)
                                                                 tCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGt                                                                                 >  1:481389/1‑150 (MQ=255)
                                                                 tCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGt                                                                                 >  1:1841021/1‑150 (MQ=255)
                                                                 tCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGCCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAAc                                                                                                  <  1:2351855/133‑1 (MQ=255)
                                                                   ttGTCCTGACCGCTCTCGCTTTCTGCCGTGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGc                                                                                                                                                <  2:1820925/85‑1 (MQ=255)
                                                                   ttGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACAt                                                                                                                            >  1:2309758/1‑105 (MQ=255)
                                                                   ttGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACAt                                                                                                                            <  2:2309758/105‑1 (MQ=255)
                                                                   ttGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAAc                                                                                                  <  2:2306923/131‑1 (MQ=255)
                                                                        cTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCTGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCggg                                                                          >  2:1271254/1‑150 (MQ=255)
                                                                         tGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTgg                                                                                                                                      <  1:835551/89‑1 (MQ=255)
                                                                         tGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTgg                                                                                                                                      >  2:835551/1‑89 (MQ=255)
                                                                         tGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGa                                                                         >  2:786110/1‑150 (MQ=255)
                                                                         tGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGAAGAAAAAGAAGATGAACGTGCCCATGACCTAGGTCAGCgggc                                                                         >  2:632861/1‑149 (MQ=255)
                                                                          gACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGAGGTCGGATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGaa                                                                        >  1:24488/1‑150 (MQ=255)
                                                                             cGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCg                                                                                                                          <  2:2058673/97‑1 (MQ=255)
                                                                             cGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCg                                                                                                                          >  1:2058673/1‑97 (MQ=255)
                                                                               ctctCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGa                                                                   >  1:31105/1‑150 (MQ=255)
                                                                                 ctcGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATg                                                                 >  1:1735314/1‑150 (MQ=255)
                                                                                   cGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGga                                                               <  2:888596/150‑1 (MQ=255)
                                                                                          ttgtcccactatcaggcattggccagcgaaacgctgcaatggctgcgtgagctggcCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGt                                                                                 <  1:1092383‑M2/69‑1 (MQ=255)
                                                                                          ttgtcccactatcaggcattggccagcgaaacgctgcaatggctgcgtgagctggcCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGt                                                                                 >  2:1092383‑M2/57‑125 (MQ=255)
                                                                                          tGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCCGCGGGAAGCCGATGGAGAAAATg                                                        >  2:1219629/1‑150 (MQ=255)
                                                                                           gCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCCGGCCGATACCTGAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGt                                                       <  2:824637/150‑1 (MQ=255)
                                                                                            ccATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGa                                                                                        >  2:800585/1‑116 (MQ=255)
                                                                                            ccATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGa                                                                                        <  1:800585/116‑1 (MQ=255)
                                                                                             cATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAAc                                                                                                  <  1:1582056/105‑1 (MQ=255)
                                                                                              ctGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCa                                                    >  1:598504/2‑150 (MQ=255)
                                                                                              aTGCTCAGCGTACCCTCGCCGTCCCACCCAGCCATTGCACCGTTCCGCTGGCCAATGGCTGATAGGGGGCCAGGACGTCGGCCTGGCCGACCCAGAAGGTGAACGTGCCCTTGGCCACGGGCCGCGGCAAGCCGAGGGAGAAAATGttga                                                    >  2:459122/1‑148 (MQ=255)
                                                                                              aTGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCa                                                    <  2:1735314/150‑1 (MQ=255)
                                                                                              aTGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCATGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCa                                                    >  1:1049008/1‑150 (MQ=255)
                                                                                                    aGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGaa                                                                                                   >  1:2272667/1‑97 (MQ=255)
                                                                                                     gCGTAGCCTCGCCAGCGCACGCAGCCATTGTAATGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGTCCCAGAACATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTgcgg                                             <  2:1049008/150‑1 (MQ=255)
                                                                                                     gCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGa                                                                                        <  2:890348/107‑1 (MQ=255)
                                                                                                       aggcattggccagcgaaacgctgcaatggctgcgtgagctggcCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTgcggcg                                           >  2:1155671‑M2/44‑150 (MQ=255)
                                                                                                          cattggccagcgaaacgctgcaatggctgcgtgagctggcCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGc                                                  >  1:2190602‑M2/41‑140 (MQ=255)
                                                                                                          cattggccagcgaaacgctgcaatggctgcgtgagctggcCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGc                                                  <  2:2190602‑M2/100‑1 (MQ=255)
                                                                                                           ccTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGt                                                                                 >  1:1208684/1‑108 (MQ=255)
                                                                                                           ccTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGt                                                                                 <  2:1208684/108‑1 (MQ=255)
                                                                                                            cTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGAGGGAAGCCGATGGAGAAAATGTTCAGCTGcggcgcggcg                                      >  1:1098240/1‑150 (MQ=255)
                                                                                                             tCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAggcca                                                                               >  1:1819951/1‑105 (MQ=255)
                                                                                                             tCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAAt                                                         <  1:2119818/130‑1 (MQ=255)
                                                                                                             tCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAAt                                                         >  2:2119818/1‑130 (MQ=255)
                                                                                                             tCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGCCa                                                                               <  2:1819951/108‑1 (MQ=255)
                                                                                                               GCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAgg                                                                                  >  2:1584397‑M1/1‑103 (MQ=255)
                                                                                                               GCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAgg                                                                                  <  1:1584397‑M1/103‑1 (MQ=255)
                                                                                                               GCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGcgcggcgcgg                                   >  2:1322287‑M1/1‑150 (MQ=255)
                                                                                                                CCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGa                                                                                                    >  2:1112554‑M1/1‑84 (MQ=255)
                                                                                                                 CAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGt                                 <  1:2116495‑M1/150‑1 (MQ=255)
                                                                                                                  gcgaaacgctgcaatggctgcgtttcgctggcCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTc                                >  1:1391811‑M2/33‑150 (MQ=255)
                                                                                                                  AGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTc                                >  1:640843‑M1/1‑150 (MQ=255)
                                                                                                                   GCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTCa                               <  1:1755044‑M1/150‑1 (MQ=255)
                                                                                                                       aCGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTCATTAc                           <  1:1638667/150‑1 (MQ=255)
                                                                                                                           aGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGAt                                                                  <  2:1950867/107‑1 (MQ=255)
                                                                                                                           aGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGAt                                                                  >  1:1950867/1‑107 (MQ=255)
                                                                                                                             ccATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTCATTACGCCaaa                     <  2:1382087/150‑1 (MQ=255)
                                                                                                                             ccATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTCATTACGCCaaa                     <  2:1814854/150‑1 (MQ=255)
                                                                                                                              caatggctgcgtgagctggcCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTCATTACGCCAAAg                    <  1:1155671‑M2/130‑1 (MQ=255)
                                                                                                                              cATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTCATTACGCCAAAg                    <  1:471189/150‑1 (MQ=255)
                                                                                                                                ttGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTCATTACGCCAAAGGc                  >  2:931496/1‑150 (MQ=255)
                                                                                                                                       gTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGc                                                                      >  2:1849701/1‑91 (MQ=255)
                                                                                                                                       gTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGc                                                                      <  1:1849701/91‑1 (MQ=255)
                                                                                                                                       gTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTAATTACGCCAAAGGCAATGTTc           <  2:2332001/150‑1 (MQ=255)
                                                                                                                                         ttCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTCATTACGCCAAAGGCAATGTTcac         <  2:481389/150‑1 (MQ=255)
                                                                                                                                         tgagctggcCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTCATTACGCCAAAGGCAATGTTcac         <  2:485402‑M2/141‑1 (MQ=255)
                                                                                                                                              tggcCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTCATTACGCCAAAGGCAATGTTcacca       <  1:2081194‑M2/143‑1 (MQ=255)
                                                                                                                                                gcCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTCATTACGCCAAAGGCAATGTTCACCACcagc  >  2:1500375‑M2/3‑150 (MQ=255)
                                                                                                                                                 cCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTCATTACGCCAAAGGCAATGtt            <  2:2163126‑M2/138‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                   
CTTGGAGCGGGCGACCTCGCCCTTCTCGCGGGCGTCGCGCTTGCGCTTTTCGGTGGGGTCTTCTGTCTTGTCCTGACCGCTCTCGCTTTCTGCCATGCTCAGCGTACCCTCGCCAGCTCACGCAGCCATTGCAGCGTTTCGCTGGCCAATGCCTGATAGTGGGACAAGACATCGGCCAGGCCGACCCAGAAGATGAACATGCCCATGACCAAGGTCAGCGGGAAGCCGATGGAGAAAATGTTCAGCTGCGGCGCGGCGCGGGTCATTACGCCAAAGGCAATGTTCACCACCAGC  >  NC_002947/4946530‑4946823

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.