New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4949028	88 (0.990)	9 (0.110)	9/234	NT	10.0%	coding (363/486 nt)	fliN	flagellar basal‑body C‑ring protein
	?	NC_002947	= 4949050	78 (0.930)					coding (341/486 nt)	fliN	flagellar basal‑body C‑ring protein

CCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4948874‑4949028 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcga‑‑‑gcTCGACCGCCTGGCCGGCGAGCCGCTCGACGTGCTGGTCAACGGCACGCTGATCGCCCATGGCGAAGTGGTCGTGGTCAACGAAAAGTTCGGCATCCGCCTGACCGACGTGATCAGCCCCAGCGAACGTATCAAGAAGCTGCGCTGA  <  NC_002947/4949050‑4948905                                                                                                                                                                                                                                                                                                                  CCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGT                                                                                                                                                            >  2:248201/1‑150  CGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTC                                                                                                                                                           <  2:1166065/150‑1     AGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑G                                                                                                                                                     <  1:557847/150‑1                                TCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACG‑‑‑‑‑‑‑‑‑TCGACCGCCTGGCCGGCGAGCCGCTCGACGTG                                                                                                                    >  2:390228/1‑150                                 CAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCACCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGACCGCCTGGCCGGCGAGCCGC                                                                                                                            <  2:2044613/150‑1                                                     TTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCTCGACCGCCTGGCCGGCGAGCCGCTCGACGTG                                                                                                                    <  1:1208818/135‑1                                                     TTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCTCGACCGCCTGGCCGGCGAGCCGCTCGACGTG                                                                                                                    >  2:1208818/1‑135                                                                                                        CACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCTCGACCGCCTGGCCGGCGAGCCGCTCGACGTGC                                                                                                                   >  1:1783152/1‑85                                                                                                        CACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCTCGACCGCCTGGCCGGCGAGCCGCTCGACGTGC                                                                                                                   <  2:1783152/85‑1                                                                                                                          GGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑G‑‑‑‑‑‑CGGCTCGCCGGCCAGGCGGTCGACGTGCTGGTCAACGGCACGCTGATCGCCCATGGCGAAGTGGTCGTGGTCAACGAAAAGTTCGGCATCCGCCTGACCGACGTGATCAGCCCCAGC                          >  1:390228/1‑150                                                                                                                                            GACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCCGCTCGACGTGCTGGTCAACGGCACGCTGATCGCCCATGGCGAAGTGGTCGTGGTCAACGAAAAGTTCGGCATCCGCCTGACCGACGTGATCAGCCCCAGCGAACGTAT                  <  1:1865560/149‑1                                                                                                                                            GACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCCGCTCGACGTGCTGGTCAACGGCACGCTGATCGCCCATGGCGAAGTGGTCGTGGTCAACGAAAAGTTCGGCATCCGCCTGACCGACGTGATCAGCCCCAGCGAACGTAT                  >  2:1865560/1‑149                                                                                                                                                      TCGA‑‑‑GCTCGACCGCCTGGCCGGCGAGCCGCTCGACGTGCTGGTCAACGGCACGCTGATCGCCCATGGCGAAGTGGTCGTGGTCAACGAAAAGTTCGGCATCCGCCTGACCGACGTGATCAGCCCCAGCGAACGTATCAAGAAGCTGCGCT    <  2:724556/150‑1                                                                                                                                                        GA‑‑‑GCTCGACCGCCTGGCCGGCGAGCCGCTCGACGTGCTGGTCAACGGCACGCTGATCGCCCATGGCGAAGTGGTCGTGGTCAACGAAAAGTTCGGCATCCGCCTGACCGACGTGATCAGCCCCAGCGAACGTATCAAGAAGCTGCGCTGA  <  1:1356528/150‑1                                                                                                                                                        GA‑‑‑GCTCGACCGCCTGGCCGGCGAGCCGCTCGACGTGCTGGTCAACGGCACGCTGATCGCCCATGGCGAAGTGGTCGTGGTCAACGAAAAGTTCGGCATCCGCCTGACCGACGTGATCAGCCCCAGCGAACGTATCAAGAAGCTGCGCTGA  <  1:192503/150‑1                                                                                                                                                        GA‑‑‑GCTCGACCGCCTGGCCGGCGAGCCGCTCGACGTGCTGGTCAACGGCACGCTGATCGCCCATGGCGAAGTGGTCGTGGTCAACGAAAAGTTCGGCATCCGCCTGACCGACGTGATCAGCCCCAGCGAACGTATCAAGAAGCTGCGCTGA  >  1:248201/1‑150                                                                                                                                                                                                                                                                                                                  CCGCAGCGATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4948874‑4949028 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcga‑‑‑gcTCGACCGCCTGGCCGGCGAGCCGCTCGACGTGCTGGTCAACGGCACGCTGATCGCCCATGGCGAAGTGGTCGTGGTCAACGAAAAGTTCGGCATCCGCCTGACCGACGTGATCAGCCCCAGCGAACGTATCAAGAAGCTGCGCTGA  <  NC_002947/4949050‑4948905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.