New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 494902888 (0.990)9 (0.110) 9/234 NT 10.0% coding (363/486 nt) fliN flagellar basal‑body C‑ring protein
?NC_002947 = 4949050 78 (0.930)coding (341/486 nt) fliN flagellar basal‑body C‑ring protein

Only 100 of 115 total aligned reads displayed.

ATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGTTCGGGCCTTCGAGGCTGA  >  NC_002947/4948882‑4949176
                                                                                                                                                     |                                                                                                                                                    
aTGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGc                                                                                                                                                   <  1:1724919/150‑1 (MQ=255)
     gcgcATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGcc                                                                                                                                              >  1:1831800/1‑150 (MQ=255)
     gcgcATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGcc                                                                                                                                              >  1:1812721/1‑150 (MQ=255)
      cgcATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCg                                                                                                                                             <  1:890480/150‑1 (MQ=255)
       gcATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCgg                                                                                                                                            <  1:73451/150‑1 (MQ=255)
         aTCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTAAA‑‑‑CCGGCTCGCCGGcc                                                                                                                                          >  2:1869373/1‑150 (MQ=255)
             tGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGc                                                                                                                                      <  1:387190/150‑1 (MQ=255)
              gCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCg                                                                                                                                     <  2:1853694/150‑1 (MQ=255)
               cccTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCgg                                                                                                                                    >  1:1994715/1‑150 (MQ=255)
                ccTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGt                                                                                                                                   >  1:2229063/1‑150 (MQ=255)
                ccTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGt                                                                                                                                   >  2:2152813/1‑150 (MQ=255)
                  ttCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCg                                                                                                                                 >  1:517131/1‑150 (MQ=255)
                  ttCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCg                                                                                                                                 >  2:212351/1‑150 (MQ=255)
                       tCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAgctc                                                                                                                            <  1:1356528‑M2/150‑5 (MQ=255)
                       tCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAgctc                                                                                                                            <  1:192503‑M2/150‑5 (MQ=255)
                       tCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAgctc                                                                                                                            >  1:248201‑M2/1‑146 (MQ=255)
                       tCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACG‑‑‑‑‑‑‑‑cgaccgcctggccggcgagccgctcgacgtg                                                                                                                        >  2:390228‑M1/1‑119 (MQ=255)
                         aGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAgctcga                                                                                                                          <  2:724556‑M2/150‑7 (MQ=255)
                            gcAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATcc                                                                                                                       >  2:322439/1‑149 (MQ=255)
                            gcAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCa                                                                                                                       <  2:1415066/150‑1 (MQ=255)
                             cAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCAc                                                                                                                      <  2:1022813/150‑1 (MQ=255)
                               gCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCg                                                                                                                    <  2:1812721/150‑1 (MQ=255)
                                cttcttGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGTCCAGGCGGTCGAGCTCGATCACCGa                                                                                                                   <  2:807754/150‑1 (MQ=255)
                                cttcttGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTc                                                                                                                                  >  1:727254/1‑135 (MQ=255)
                                cttcttGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTc                                                                                                                                  <  2:727254/135‑1 (MQ=255)
                                      gATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCATGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTg                                                                                                             >  1:1002505/1‑150 (MQ=255)
                                       aTACGTTCGCTGGGGCTGTTCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCCCGACCACTTCGCCATGGTCGATCAGCTTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGTGCTCGATCACCGAGCCCTgg                                                                                                            <  2:1664601/150‑1 (MQ=255)
                                       aTACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTgg                                                                                                            >  2:862153/1‑150 (MQ=255)
                                       aTACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGACCGCCTGGCCGGCGAgccgctcgacgtgctggtc                                                                                                             >  2:1865560‑M2/1‑130 (MQ=255)
                                       aTACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGACCGCCTGGCCGGCGAgccgctcgacgtgctggtc                                                                                                             <  1:1865560‑M2/149‑20 (MQ=255)
                                         aCGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGtt                                                                                                          <  1:212351/150‑1 (MQ=255)
                                         aCGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGCCAGTCGAGCTCGATCACCGAGCCCTGGtt                                                                                                          <  1:327622/150‑1 (MQ=255)
                                           gTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCg                                                                                                                                             <  1:325843/113‑1 (MQ=255)
                                           gTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCg                                                                                                                                             >  2:325843/1‑113 (MQ=255)
                                           gTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGa                                                                                                        >  2:1969387/1‑150 (MQ=255)
                                            ttagCTCGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGGCCACTGCGCCATGGGCGATCAGCGTGCAGTTGACCAGCACGTCGA‑‑‑GCGGCTCGGCGGCCAGGCAGTCGAGCAGGATCACCGAGCCCTGGTTgtg                                                                                                       >  2:2324404/4‑148 (MQ=255)
                                            ttCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCtcgaccgcctggccggcgagccgctcgacgtg                                                                                                                      <  1:1208818‑M1/135‑33 (MQ=255)
                                            ttCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCtcgaccgcctggccggcgagccgctcgacgtg                                                                                                                      >  2:1208818‑M1/1‑103 (MQ=255)
                                            ttCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAg                                                                                                       <  2:8430/150‑1 (MQ=255)
                                            ttCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAg                                                                                                       >  1:1858572/1‑150 (MQ=255)
                                             tCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGc                                                                                                      <  2:2229063/150‑1 (MQ=255)
                                               gCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑CCGCCTGGCCGGCGAGCCG‑‑‑‑tcgacgtgctggtcaacggcacgctgatcgcc                                                                                                 >  1:390228‑M2/1‑118 (MQ=255)
                                                  ggggCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTgcag                                                                                                 <  2:1858572/150‑1 (MQ=255)
                                                           cACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCg                                                                                        >  1:1026288/1‑150 (MQ=255)
                                                              gTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCt                                                                                                     >  1:1202436/1‑134 (MQ=255)
                                                              gTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCt                                                                                                     <  2:1202436/134‑1 (MQ=255)
                                                               tCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATg                                                                                    <  2:2280794/150‑1 (MQ=255)
                                                                    cAGGCGGATGCCGAACTTTTCGTTGACCACGACCAGTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGAt                                                                               <  2:192503/150‑1 (MQ=255)
                                                                     aGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGAtc                                                                              >  1:1517132/1‑150 (MQ=255)
                                                                      ggCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGAtct                                                                             >  2:268631/1‑150 (MQ=255)
                                                                        cGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCg                                                                           <  2:1517132/150‑1 (MQ=255)
                                                                        cGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCg                                                                           <  2:1026288/150‑1 (MQ=255)
                                                                        cGGATGCCGAACTTTTCGTTGACCACGACCACTGCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCg                                                                           <  2:393926/150‑1 (MQ=255)
                                                                              ccGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGtgctg                                                                     <  1:1761976/150‑1 (MQ=255)
                                                                              ccGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGtgctg                                                                     >  2:1361017/1‑150 (MQ=255)
                                                                               cGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGtgctgc                                                                    >  1:2139600/1‑150 (MQ=255)
                                                                               cGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGtgctgc                                                                    <  1:1664294/150‑1 (MQ=255)
                                                                                   cTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCAc                                                                >  1:1287748/1‑150 (MQ=255)
                                                                                         gTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTgcagca                                                                                               >  1:253774/1‑113 (MQ=255)
                                                                                         gTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTgcagca                                                                                               <  2:253774/113‑1 (MQ=255)
                                                                                          ttGACCACGCCCACTTCGCCATGGGCGCTCACCGGTCCGTGTACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATg                                                         <  2:1831800/150‑1 (MQ=255)
                                                                                             accacgaccacTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGaa                                                      <  1:191952/150‑1 (MQ=255)
                                                                                             accacgaccacTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGaa                                                      >  2:1223129/1‑150 (MQ=255)
                                                                                             accacgaccacTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGAAGCCCTTCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGaa                                                      <  1:1869373/150‑1 (MQ=255)
                                                                                               cacgaccacTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCtcgaccgcctggccggcgagccgctcgacgtgc                                                                                                                     >  1:1783152‑M1/1‑52 (MQ=255)
                                                                                               cacgaccacTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCtcgaccgcctggccggcgagccgctcgacgtgc                                                                                                                     <  2:1783152‑M1/85‑34 (MQ=255)
                                                                                               cacgaccacTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAg                                                                                                                                        <  2:1856606/66‑1 (MQ=255)
                                                                                               cacgaccacTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAg                                                                                                                                        >  1:1856606/1‑66 (MQ=255)
                                                                                               cacgaccacTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAAt                                                    <  2:1356528/150‑1 (MQ=255)
                                                                                                     cacTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCAc                                              >  2:2197218/1‑150 (MQ=255)
                                                                                                        ttCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCgg                                           >  1:832211/1‑150 (MQ=255)
                                                                                                              aTGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGGGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTc                                     >  1:1078605/1‑150 (MQ=255)
                                                                                                               tGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTg                                                                                                             >  2:1698770/1‑77 (MQ=255)
                                                                                                               tGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTg                                                                                                             <  1:1698770/77‑1 (MQ=255)
                                                                                                                 ggCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑Gggctcgccggccaggcggtcgacgtgctggtcaacggcacgctgatcgcccatggcgaagtggtcgtggtcaacgaaaagttcggcatccgcctgaccgacgtgatcagccccagc                                   >  1:390228‑M1/1‑34 (MQ=255)
                                                                                                                 ggCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAg                                  <  1:862153/150‑1 (MQ=255)
                                                                                                                               cGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCgg                                           <  1:1988694/127‑1 (MQ=255)
                                                                                                                               cGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCgg                                           >  2:1988694/1‑127 (MQ=255)
                                                                                                                               cGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGt                    >  1:332092/1‑150 (MQ=255)
                                                                                                                                gTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATgg                                                        >  1:1774097/1‑113 (MQ=255)
                                                                                                                                gTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGtt                   <  2:1994715/150‑1 (MQ=255)
                                                                                                                                   gACCAGCACGTCGAGCGGCtcgccggccaggcggtcgagccgctcgacgtgctggtcaacggcacgctgatcgcccatggcgaagtggtcgtggtcaacgaaaagttcggcatccgcctgaccgacgtgatcagccccagcgaacgtat                    <  1:1865560‑M1/149‑131 (MQ=255)
                                                                                                                                   gACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGTTCgg                <  1:268631/150‑1 (MQ=255)
                                                                                                                                   gACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGTTCgg                <  1:2197218/150‑1 (MQ=255)
                                                                                                                                   gACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGGCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGGTGCGGATGTTGATCTCGGTGCGGCCCACTTCCATGGAAATGTTCACCCAGGTGTCCAGGATCACGTCCAGGTTCgg                <  1:65438/150‑1 (MQ=255)
                                                                                                                                    aCCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGTTCggg               >  1:1033834/1‑150 (MQ=255)
                                                                                                                                      cAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGTTCGGGcc             >  1:1507500/1‑150 (MQ=255)
                                                                                                                                        gCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAgctcgacgtgctggtcaacggcacgctgatcgcccatggcgaagtggtcgtg                                                                            >  1:1783152‑M2/1‑33 (MQ=255)
                                                                                                                                        gCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAgctcgacgtgctggtcaacggcacgctgatcgcccatggcgaagtggtcgtg                                                                            <  2:1783152‑M2/85‑53 (MQ=255)
                                                                                                                                        gCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCgg                                                                          >  2:1518710/1‑87 (MQ=255)
                                                                                                                                        gCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCgg                                                                          <  1:1518710/87‑1 (MQ=255)
                                                                                                                                         cACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAgctcgacgtgctggtcaacggcacgctgatcgcccatggcgaagtggtcgtggtcaacgaaaagttcggcatccgcctgaccgacgtgatcagccccagcgaa                         >  2:1208818‑M2/1‑32 (MQ=255)
                                                                                                                                         cACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAgctcgacgtgctggtcaacggcacgctgatcgcccatggcgaagtggtcgtggtcaacgaaaagttcggcatccgcctgaccgacgtgatcagccccagcgaa                         <  1:1208818‑M2/135‑104 (MQ=255)
                                                                                                                                         cACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAcgtgctggtcaacggcacgctgatcgcccatggcgaagtggtcgtggtcaacgaaaagttcggcatccgcctgaccgacgtgatcagccccagcgaacgtatcaagaagctgcgctga          >  2:390228‑M2/1‑32 (MQ=255)
                                                                                                                                             tCGA‑‑‑TCTGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGTGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGTTCGGGCCTTCGAgg      <  1:941452/150‑1 (MQ=255)
                                                                                                                                             tCGA‑‑‑GCtcgaccgcctggccggcgagccgctcgacgtgctggtcaacggcacgctgatcgcccatggcgaagtggtcgtggtcaacgaaaagttcggcatccgcctgaccgacgtgatcagccccagcgaacgtatcaagaagctgcgct      <  2:724556‑M1/150‑145 (MQ=255)
                                                                                                                                               gA‑‑‑GCtcgaccgcctggccggcgagccgctcgacgtgctggtcaacggcacgctgatcgcccatggcgaagtggtcgtggtcaacgaaaagttcggcatccgcctgaccgacgtgatcagccccagcgaacgtatcaagaagctgcgctga    >  1:248201‑M1/1‑4 (MQ=255)
                                                                                                                                               gA‑‑‑GCtcgaccgcctggccggcgagccgctcgacgtgctggtcaacggcacgctgatcgcccatggcgaagtggtcgtggtcaacgaaaagttcggcatccgcctgaccgacgtgatcagccccagcgaacgtatcaagaagctgcgctga    <  1:1356528‑M1/150‑147 (MQ=255)
                                                                                                                                               gA‑‑‑GCtcgaccgcctggccggcgagccgctcgacgtgctggtcaacggcacgctgatcgcccatggcgaagtggtcgtggtcaacgaaaagttcggcatccgcctgaccgacgtgatcagccccagcgaacgtatcaagaagctgcgctga    <  1:192503‑M1/150‑147 (MQ=255)
                                                                                                                                                    gCGGCTCGCCGGCCAGGCGGTCGAgccgctcgacgtgctggtcaacggcacgctgatcgcccatggtgaagtggtcgtggtcaacgaaaagttcggcatccgcctgaccgacgtgatcagccccagcgaacgtatcaagaagctgcgctg  <  2:2044613‑M2/150‑127 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
ATGGCGCGCATCGTGCCCTTCACTCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGA‑‑‑GCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGTTCGGGCCTTCGAGGCTGA  >  NC_002947/4948882‑4949176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.