New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4949028	88 (0.990)	9 (0.110)	9/234	NT	10.0%	coding (363/486 nt)	fliN	flagellar basal‑body C‑ring protein
	?	NC_002947	= 4949050	78 (0.930)					coding (341/486 nt)	fliN	flagellar basal‑body C‑ring protein

TCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGTTCGGGCCTTCGAGGCTGACATTTTCATTCGGCTTCGGCGAG  >  NC_002947/4948905‑4949199                                                                                                                                                  |                                                                                                                                                      tCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAgctc                                                                                                                                                   <  1:192503‑M2/150‑5 (MQ=255) tCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAgctc                                                                                                                                                   >  1:248201‑M2/1‑146 (MQ=255) tCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAgctc                                                                                                                                                   <  1:1356528‑M2/150‑5 (MQ=255)   aGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAgctcga                                                                                                                                                 <  2:724556‑M2/150‑7 (MQ=255)      gcAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATcc                                                                                                                                              >  2:322439/1‑149 (MQ=255)      gcAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCa                                                                                                                                              <  2:1415066/150‑1 (MQ=255)       cAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCAc                                                                                                                                             <  2:1022813/150‑1 (MQ=255)         gCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCg                                                                                                                                           <  2:1812721/150‑1 (MQ=255)          cttcttGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGTCCAGGCGGTCGAGCTCGATCACCGa                                                                                                                                          <  2:807754/150‑1 (MQ=255)                gATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCATGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTg                                                                                                                                    >  1:1002505/1‑150 (MQ=255)                 aTACGTTCGCTGGGGCTGTTCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCCCGACCACTTCGCCATGGTCGATCAGCTTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGTGCTCGATCACCGAGCCCTgg                                                                                                                                   <  2:1664601/150‑1 (MQ=255)                 aTACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTgg                                                                                                                                   >  2:862153/1‑150 (MQ=255)                 aTACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGACCGCCTGGCCGGCGAgccgctcgacgtgctggtc                                                                                                                                    >  2:1865560‑M2/1‑130 (MQ=255)                 aTACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGACCGCCTGGCCGGCGAgccgctcgacgtgctggtc                                                                                                                                    <  1:1865560‑M2/149‑20 (MQ=255)                   aCGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGtt                                                                                                                                 <  1:212351/150‑1 (MQ=255)                   aCGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGCCAGTCGAGCTCGATCACCGAGCCCTGGtt                                                                                                                                 <  1:327622/150‑1 (MQ=255)                    cGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTg                                                                                                                                <  2:2365749/150‑1 (MQ=255)                     gTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGa                                                                                                                               >  2:1969387/1‑150 (MQ=255)                      ttagCTCGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGGCCACTGCGCCATGGGCGATCAGCGTGCAGTTGACCAGCACGTCGAGCGGCTCGGCGGCCAGGCAGTCGAGCAGGATCACCGAGCCCTGGTTgtg                                                                                                                              >  2:2324404/4‑148 (MQ=255)                      ttCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAg                                                                                                                              <  2:8430/150‑1 (MQ=255)                      ttCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAg                                                                                                                              >  1:1858572/1‑150 (MQ=255)                       tCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGc                                                                                                                             <  2:2229063/150‑1 (MQ=255)                         gCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGACCGCCTGGCCGGCGAGCCG‑‑‑‑tcgacgtgctggtcaacggcacgctgatcgcc                                                                                                                        >  1:390228‑M2/1‑118 (MQ=255)                            ggggCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTgcag                                                                                                                        <  2:1858572/150‑1 (MQ=255)                                    tCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGc                                                                                                                <  1:322439/150‑1 (MQ=255)                                     cACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCg                                                                                                               >  1:1026288/1‑150 (MQ=255)                                        gTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCt                                                                                                                            <  2:1202436/134‑1 (MQ=255)                                        gTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCt                                                                                                                            >  1:1202436/1‑134 (MQ=255)                                         tCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATg                                                                                                           <  2:2280794/150‑1 (MQ=255)                                              cAGGCGGATGCCGAACTTTTCGTTGACCACGACCAGTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGAt                                                                                                      <  2:192503/150‑1 (MQ=255)                                               aGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGAtc                                                                                                     >  1:1517132/1‑150 (MQ=255)                                                ggCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGAtct                                                                                                    >  2:268631/1‑150 (MQ=255)                                                  cGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCg                                                                                                  <  2:1026288/150‑1 (MQ=255)                                                  cGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCg                                                                                                  <  2:1517132/150‑1 (MQ=255)                                                  cGGATGCCGAACTTTTCGTTGACCACGACCACTGCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCg                                                                                                  <  2:393926/150‑1 (MQ=255)                                                        ccGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGtgctg                                                                                            <  1:1761976/150‑1 (MQ=255)                                                        ccGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGtgctg                                                                                            <  1:1800849/150‑1 (MQ=255)                                                        ccGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGtgctg                                                                                            >  2:1361017/1‑150 (MQ=255)                                                         cGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGtgctgc                                                                                           >  1:2139600/1‑150 (MQ=255)                                                         cGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGtgctgc                                                                                           <  1:1664294/150‑1 (MQ=255)                                                          gAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCATGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGcc                                                                                          <  2:1002505/150‑1 (MQ=255)                                                           aaCTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCAc                                                                                                                                             <  1:1243866/98‑1 (MQ=255)                                                           aaCTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCAc                                                                                                                                             >  2:1243866/1‑98 (MQ=255)                                                             cTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCAc                                                                                       >  1:1287748/1‑150 (MQ=255)                                                              ttttCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGAACAGCATCCTGCCTTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACt                                                                                      >  2:65438/1‑150 (MQ=255)                                                                  cGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCa                                                                                  <  1:2152813/150‑1 (MQ=255)                                                                   gTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTgcagca                                                                                                                      <  2:253774/113‑1 (MQ=255)                                                                   gTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTgcagca                                                                                                                      >  1:253774/1‑113 (MQ=255)                                                                    ttGACCACGCCCACTTCGCCATGGGCGCTCACCGGTCCGTGTACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATg                                                                                <  2:1831800/150‑1 (MQ=255)                                                                       accacgaccacTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGaa                                                                             >  2:1223129/1‑150 (MQ=255)                                                                       accacgaccacTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGaa                                                                             <  1:191952/150‑1 (MQ=255)                                                                       accacgaccacTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGAAGCCCTTCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGaa                                                                             <  1:1869373/150‑1 (MQ=255)                                                                         cacgaccacTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAAt                                                                           <  2:1356528/150‑1 (MQ=255)                                                                               cacTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCAc                                                                     >  2:2197218/1‑150 (MQ=255)                                                                                  ttCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCgg                                                                  >  1:832211/1‑150 (MQ=255)                                                                                     gCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGAt                                                               <  1:1914079/150‑1 (MQ=255)                                                                                        aTGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGGGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTc                                                            >  1:1078605/1‑150 (MQ=255)                                                                                         tGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTg                                                                                                                                    >  2:1698770/1‑77 (MQ=255)                                                                                         tGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTg                                                                                                                                    <  1:1698770/77‑1 (MQ=255)                                                                                           ggCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAg                                                         <  1:862153/150‑1 (MQ=255)                                                                                                         cGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCgg                                                                  <  1:1988694/127‑1 (MQ=255)                                                                                                         cGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCgg                                                                  >  2:1988694/1‑127 (MQ=255)                                                                                                         cGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGt                                           >  1:332092/1‑150 (MQ=255)                                                                                                          gTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATgg                                                                               >  1:1774097/1‑113 (MQ=255)                                                                                                          gTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATgg                                                                               <  2:1774097/113‑1 (MQ=255)                                                                                                          gTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGtt                                          <  2:1994715/150‑1 (MQ=255)                                                                                                             gACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGTTCgg                                       <  1:268631/150‑1 (MQ=255)                                                                                                             gACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGTTCgg                                       <  1:2197218/150‑1 (MQ=255)                                                                                                             gACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGGCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGGTGCGGATGTTGATCTCGGTGCGGCCCACTTCCATGGAAATGTTCACCCAGGTGTCCAGGATCACGTCCAGGTTCgg                                       <  1:65438/150‑1 (MQ=255)                                                                                                              aCCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGTTCggg                                      >  1:1033834/1‑150 (MQ=255)                                                                                                                cAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGTTCGGGcc                                    >  1:1507500/1‑150 (MQ=255)                                                                                                                  gCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAgctcgacgtgctggtcaacggcacgctgatcgcccatggcgaagtggtcgtg                                                                                                   <  2:1783152‑M2/85‑53 (MQ=255)                                                                                                                  gCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAgctcgacgtgctggtcaacggcacgctgatcgcccatggcgaagtggtcgtg                                                                                                   >  1:1783152‑M2/1‑33 (MQ=255)                                                                                                                  gCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCgg                                                                                                 <  1:1518710/87‑1 (MQ=255)                                                                                                                  gCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCgg                                                                                                 >  2:1518710/1‑87 (MQ=255)                                                                                                                  gCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGTTCGGGCCtt                                  >  1:1695906/1‑150 (MQ=255)                                                                                                                   cACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAgctcgacgtgctggtcaacggcacgctgatcgcccatggcgaagtggtcgtggtcaacgaaaagttcggcatccgcctgaccgacgtgatcagccccagcgaa                                                <  1:1208818‑M2/135‑104 (MQ=255)                                                                                                                   cACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAgctcgacgtgctggtcaacggcacgctgatcgcccatggcgaagtggtcgtggtcaacgaaaagttcggcatccgcctgaccgacgtgatcagccccagcgaa                                                >  2:1208818‑M2/1‑32 (MQ=255)                                                                                                                   cACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAcgtgctggtcaacggcacgctgatcgcccatggcgaagtggtcgtggtcaacgaaaagttcggcatccgcctgaccgacgtgatcagccccagcgaacgtatcaagaagctgcgctga                                 >  2:390228‑M2/1‑32 (MQ=255)                                                                                                                       tCGATCTGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGTGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGTTCGGGCCTTCGAgg                             <  1:941452/150‑1 (MQ=255)                                                                                                                       tCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGTTCGGGCCTTCGAgg                             <  1:573890/150‑1 (MQ=255)                                                                                                                           gCGGCTCGCCGGCCAGGCGGTCGAgccgctcgacgtgctggtcaacggcacgctgatcgcccatggtgaagtggtcgtggtcaacgaaaagttcggcatccgcctgaccgacgtgatcagccccagcgaacgtatcaagaagctgcgctg                         <  2:2044613‑M2/150‑127 (MQ=255)                                                                                                                             ggcctgCCGGCCAGGCGGTATAGTTGGATCCCCGAGCCTTGGTTGTGCCGCAGCAGGTTGCGGATGTTGAGCCCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGTTCGGGCCTTCGAGGCTGACa                       <  1:724556/145‑1 (MQ=255)                                                                                                                             ggCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGAt                                                               <  1:1804655/110‑1 (MQ=255)                                                                                                                             ggCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGAt                                                               >  2:1804655/1‑110 (MQ=255)                                                                                                                              gCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATg                                                                                <  1:377078/92‑1 (MQ=255)                                                                                                                              gCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATg                                                                                >  2:377078/1‑92 (MQ=255)                                                                                                                                tCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGCTGTTGATCTCGGTGGTGCCCGCTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGTTCGGGCCTTCTGGGCTGACCttt                    >  2:1414898/1‑150 (MQ=255)                                                                                                                                tCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGTTCGGGCCTTCGAGGCTGACAttt                    >  1:505550/1‑150 (MQ=255)                                                                                                                                  gCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCg                                                                                                  <  2:2286094/70‑1 (MQ=255)                                                                                                                                  gCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCg                                                                                                  >  1:2286094/1‑70 (MQ=255)                                                                                                                                   ccGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGAAAAAATTCACCGGGGTGACCAGGATAACGTCCATGTTTTGGCCTTCTATTCTGACAGTTTCa                 >  2:21511/1‑150 (MQ=255)                                                                                                                                    cGGCCAGGCGGGCCCGCTCTTTCACCGACCCCTGGTTGAGCTGCAGCAGGTTGCGGACGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGTTCGGGCCTTCGAGGCTGACATTTTCAt                <  1:276707/150‑1 (MQ=255)                                                                                                                                      gCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCg                                                                   <  1:1288651/97‑1 (MQ=255)                                                                                                                                      gCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCg                                                                   >  2:1288651/1‑97 (MQ=255)                                                                                                                                        cAGGCGGTCGAGCTCGATCACCGCGAAATAGGTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGTTCGGGCCTTCGAGGCTGACATTTTCAttcgg            <  2:1507500/150‑1 (MQ=255)                                                                                                                                                  aGCTCGATCACCGAGCCCTGGTTGCGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGTTCGGGCCTTCGAGGCTGACATTTTCATTCGGCTTCGGCGAg  >  1:1325432/1‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                                      TCAGCGCAGCTTCTTGATACGTTCGCTGGGGCTGATCACGTCGGTCAGGCGGATGCCGAACTTTTCGTTGACCACGACCACTTCGCCATGGGCGATCAGCGTGCCGTTGACCAGCACGTCGAGCGGCTCGCCGGCCAGGCGGTCGAGCTCGATCACCGAGCCCTGGTTGAGCTGCAGCAGGTTGCGGATGTTGATCTCGGTGCTGCCCACTTCCATGGAAATGTTCACCGGGATGTCCAGGATCACGTCCAGGTTCGGGCCTTCGAGGCTGACATTTTCATTCGGCTTCGGCGAG  >  NC_002947/4948905‑4949199

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.