| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4955866 = | 118 (1.330) | 6 (0.070) | 6/234 | NT | 5.1% | coding (934/1374 nt) | fliI | flagellum‑specific ATP synthase |
| ? | NC_002947 | 4955891 = | 112 (1.330) | coding (909/1374 nt) | fliI | flagellum‑specific ATP synthase | |||||
GACAAAGGCAAGAATGTGCTGTTGCTGATGGACTCGTTGACCCGTTTCGCCCAGGCCCAGCGGGAAATTGCCCTGGCCATCGGCGAGCCGCCAGCCACCCGGGGTTACCCGCCCTCGGTGTTCGCCAAGCTGCCCAAGCTGGTGGAGCGGGCA‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4956019‑4955866‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggca‑gC‑TTGGCGAACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGCTGGGCCTGGGCGAAACGGGTCAACGAGTCCATCAGCAACAGCACATTCTTGCCTTTGTCGCGGAAGTACTCGGCAATGC > NC_002947/4955891‑4956039 GACAAAGGCAAGAATGTGCTGTTGCTGATGGACTCGTTGACCCGTTTCGCCCAGGCCCAGCGGGAAATTGCCCTGGCCATCGGCGAGCCGCCAGCCACCCGGGGTTACCCGCCCTCGGTGTTCGCCAAGCTGCCCAAGCTGGTGGAGCGG > 2:1501873/1‑150 aatGCAAGAATGTCCTGTTGCCTATGCACTCGTTGACCCGTTTCGCCCACGCCCAGCGGTAAATTGTCCTGCCCATCGGCGATCCGCCAGCCACCCGTGGTTACCCGCCCTCGGTGTTCGCCAAGCTGCCCAAGCTGGTGGAGCGGGCA‑G < 2:447942/147‑1 AAGGCAAGAATGTGCTGTTGCTGATGGACTCGTTGACCCGTTTCGCCCAGGCCCAGCGGGAAATTGCCCTGGCCATCGGCGAGCCGCCAGCCACCCGGGGTTACCCGCCCTCGGTGTTCGCCAAGCTGCCCAAGCTGGTGGAGCGGGCA‑G < 2:278375/150‑1 ACTCGTTGACCCGTTTCGCCCAGGCCCAGCGGGAAATTGCCCTGGCCATCGGCGAGCCGCCAGCCACCCGGGGTTACCCGCCCTCGGTGTTCGCCAAGCTGCCCAAGCTGGTGGAGCGGGCA‑G > 1:311277/1‑123 ACTCGTTGACCCGTTTCGCCCAGGCCCAGCGGGAAATTGCCCTGGCCATCGGCGAGCCGCCAGCCACCCGGGGTTACCCGCCCTCGGTGTTCGCCAAGCTGCCCAAGCTGGTGGAGCGGGCA‑G < 2:311277/123‑1 CTCGGTGTTCGCCAAGCTGCCCAAGCTGGTGGAGCGGGCAGGCAATGGCGAACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGCTGGGCCTGGGCGAAACGGGTCAACGA < 1:2182833/139‑1 CTCGGTGTTCGCCAAGCTGCCCAAGCTGGTGGAGCGGGCAGGCAATGGCGAACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGCTGGGCCTGGGCGAAACGGGTCAACGA > 2:2182833/1‑139 TGTTCGCCAAGCTGCCCAAGCTGGTGGAGCGGGCA‑GC‑TTGGCGAACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGCTGG < 1:1911599/109‑1 TGTTCGCCAAGCTGCCCAAGCTGGTGGAGCGGGCA‑GC‑TTGGCGAACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGCTGG > 2:1911599/1‑109 AGCTGGTGGAGCGGGCA‑GC‑TTGGCGAACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGG > 1:223311/1‑60 AGCTGGTGGAGCGGGCA‑GC‑TTGGCGAACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGG < 2:223311/60‑1 GGCA‑GC‑TTGGCGAACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGCTGGGCCTGGGCGAAACGGGTCAAC < 2:1230962/99‑1 GGCA‑GC‑TTGGCGAACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGCTGGGCCTGGGCGAAACGGGTCAAC > 1:1230962/1‑99 GCA‑GC‑TTGGCGAACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGCTGGGCCTGGGCGAAACGGGTCAACGAGTCCATCAGCAACAGCACATTCTTGCCTTTGTCGCGGAAGTACTCGGCAA < 2:1858817/150‑1 GCA‑GC‑TTGGCGAACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGCTGGGCCTGGGCGAAACGGGTCAACGAGTCCATC < 1:389548/107‑1 GCA‑GC‑TTGGCGAACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGCTGGGCCTGGGCGAAACGGGTCAACGAGTCCATC > 2:389548/1‑107 GC‑TTGGCGAACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGCTGGGCCTGGGCGAAACGGGTCAACGAGTCCATCAGCAACAGCACATTCTTGCCTTTGTCGCGGAAGTACTCGGCAATGC < 1:2249424/150‑1 GACAAAGGCAAGAATGTGCTGTTGCTGATGGACTCGTTGACCCGTTTCGCCCAGGCCCAGCGGGAAATTGCCCTGGCCATCGGCGAGCCGCCAGCCACCCGGGGTTACCCGCCCTCGGTGTTCGCCAAGCTGCCCAAGCTGGTGGAGCGGGCA‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4956019‑4955866‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggca‑gC‑TTGGCGAACACCGAGGGCGGGTAACCCCGGGTGGCTGGCGGCTCGCCGATGGCCAGGGCAATTTCCCGCTGGGCCTGGGCGAAACGGGTCAACGAGTCCATCAGCAACAGCACATTCTTGCCTTTGTCGCGGAAGTACTCGGCAATGC > NC_002947/4955891‑4956039 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |