| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4960993 | 125 (1.410) | 8 (0.100) | 7/230 | NT | 6.6% | intergenic (‑130/+134) | fliE/atoC | flagellar hook‑basal body complex protein FliE/two‑component system DNA‑binding transcriptional activator AtoC |
| ? | NC_002947 | = 4961078 | 108 (1.310) | intergenic (‑215/+49) | fliE/atoC | flagellar hook‑basal body complex protein FliE/two‑component system DNA‑binding transcriptional activator AtoC | |||||
ACGATTGAATTCAACACCTTGGCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4960837‑4960993‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccttgTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCGGCCCTATCGCGACGCAAGGCCGCTCCCGCAGGAATTGTGTGATCTCTGGGAAATGAGTTGCGAAGGCTGGCACCTTTG < NC_002947/4961078‑4960930 ACGATTGAATTCAACACCTTGGCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC < 2:436293/150‑1 ATTGAATTCAACACCTTGGCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGC > 1:1027649/1‑150 ATTGAATTCAACACCTTGGCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGC < 1:775329/150‑1 TTGAATTCAACACCTTGGCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCC < 2:1458013/150‑1 TTCAACACCTTGGCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCG < 1:775681/142‑1 TTCAACACCTTGGCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCG > 2:775681/1‑142 CCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGC < 1:1963477/106‑1 CCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGC > 2:1963477/1‑106 AATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTC > 2:2344530/1‑150 TAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCGGCCCTAT > 2:249940/1‑150 AAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCGGCCCTATCGCGACGCAA < 1:249940/150‑1 GGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCGGCCCTATCGCGACGCAAGG < 1:2344530/150‑1 ACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCGGCCCTATC < 2:1486390/105‑1 ACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGATAGGGCCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCGGCCCTATC > 1:1486390/1‑105 AATTCCTGCGGGAGCGGCCTTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCTGCCCTATCGCGACGCAA < 2:825573/110‑1 AATTCCTGCGGGAGCGGCCTTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCGGCCCTATCGCGACGCAA > 1:825573/1‑110 CCTTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCGGCCCTATCGCGACGCAAGGCCGCTCCCGCAGGAATTGTGTGATCTCTGGGAAATGAGTTGCGAAGGCTGGCACC > 2:2100339/1‑150 CTTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCGGCCCTATCGCGACGCAAGGCCGCTCCCGCAGGAATTGTGTGATCTCTGGGAAATGAGTTGCGAAGGCTGGCACCT > 2:1696898/1‑150 CTTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCGGCCCTATCGCGACGCAAGGCCGCTCCCGCAGGAATTGTGTGATCTCTGGGAAATGAGTTG > 2:851770/1‑135 CTTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCGGCCCTATCGCGACGCAAGGCCGCTCCCGCAGGAATTGTGTGATCTCTGGGAAATGAGTTG < 1:851770/135‑1 TTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCGGCCCTATCGCGACGCAAGGCCGCTCCCGCAGGAATTGTGTGATCTCTGGGAAATGA < 2:2351845/130‑1 TTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCGGCCCTATCGCGACGCAAGGCCGCTCCCGCAGGAATTGTGTGATCTCTGGGAAATGA > 1:2351845/1‑130 GTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCGGCCCTATCGCGACGCAAGGCCGCTCCCGCAGGAATTGTGTGATCTCTGGGAAATGAGTTGCGAAGGCTGGCACCTTTG < 1:1439831/150‑1 ACGATTGAATTCAACACCTTGGCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4960837‑4960993‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccttgTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCGGCCCTATCGCGACGCAAGGCCGCTCCCGCAGGAATTGTGTGATCTCTGGGAAATGAGTTGCGAAGGCTGGCACCTTTG < NC_002947/4961078‑4960930 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |